ENSDARG00000019601
Danio rerio | |
Features
| Gene ID: | ENSDARG00000019601 | | | | | Biological name : | col12a1b | | | | | Synonyms : | col12a1b / collagen, type XII, alpha 1b | | | | | Possible biological names infered from orthology : | COL12A1 / Collagen alpha-1(XII) chain / collagen type XII alpha 1 chain / Q60847 / Q99715 | | | | | Species: | Danio rerio | | | | | Chr. number: | 20 | | Strand: | -1 | | Band: | | | Gene start: | 49451764 | | Gene end: | 49681850 | | | | | Corresponding Affymetrix probe sets: | | | | | | Cross references: | Ensembl peptide - ENSDARP00000126085
Ensembl peptide - ENSDARP00000009356
Ensembl peptide - ENSDARP00000125901
NCBI entrez gene - 562946
See in Manteia.
RefSeq - XM_017352644
RefSeq - XM_017352646
RefSeq - XM_017352647
RefSeq - XM_017352645
swissprot - I3IT32
swissprot - E7FG81
swissprot - I3ISL8
ZFIN ID - ZDB-GENE-120215-116
Ensembl - ENSDARG00000019601
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
| col12a1a / collagen, type XII, alpha 1a / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain* | ENSDARG00000078322 | 59 | | col14a1a / collagen, type XIV, alpha 1a / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain* | ENSDARG00000005762 | 23 | | col7a1 / collagen, type VII, alpha 1 / Q63870* / Q02388* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain* | ENSDARG00000021720 | 13 | | col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain* | ENSDARG00000077139 | 12 | | col7a1l / collagen type VII alpha 1-like | ENSDARG00000069692 | 12 | | col14a1b / collagen, type XIV, alpha 1b / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain* | ENSDARG00000076623 | 9 | | col6a4a / collagen, type VI, alpha 4a / A2AX52* / Col6a4* / Collagen alpha-4(VI) chain * | ENSDARG00000079752 | 9 | | si:ch211-62a1.3 / COL6A5* / COL6A6* / A6NMZ7* / A8TX70* / Q8C6K9* / Collagen alpha-6(VI) chain * / collagen type VI alpha 5 chain* / collagen type VI alpha 6 chain* | ENSDARG00000112419 | 5 | | col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain* | ENSDARG00000095915 | 5 | | vwa2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7* | ENSDARG00000075441 | 5 | | ch1073-291c23.1 / VIT* / Q6UXI7* / Q8VHI5* / vitrin* | ENSDARG00000063631 | 3 | | coch / coagulation factor C homolog, cochlin (Limulus polyphemus) / O43405* / Q62507* / cochlin* | ENSDARG00000024032 | 2 |
Protein motifs (from Interpro)
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000037 | anatomical structure | anatomical structure decreased amount , abnormal |
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| | ZFA:0000075 | spinal cord | spinal cord axon regeneration decreased occurrence , abnormal |
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| | ZFA:0001115 | trunk | trunk regenerating tissue decreased amount , abnormal |
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| | ZFA:0005147 | regenerating tissue | regenerating tissue axon decreased amount , abnormal |
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Interacting proteins (from Reactome)
No match
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