ENSG00000101203


Homo sapiens

Features
Gene ID: ENSG00000101203
  
Biological name :COL20A1
  
Synonyms : COL20A1 / collagen type XX alpha 1 chain / Q9P218
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.33
Gene start: 63293186
Gene end: 63334851
  
Corresponding Affymetrix probe sets: 232638_at (Human Genome U133 Plus 2.0 Array)   232733_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410799
Ensembl peptide - ENSP00000414753
Ensembl peptide - ENSP00000351767
Ensembl peptide - ENSP00000406345
NCBI entrez gene - 57642     See in Manteia.
RefSeq - XM_011528940
RefSeq - NM_020882
RefSeq - XM_011528937
RefSeq - XM_011528938
RefSeq - XM_011528939
RefSeq Peptide - NP_065933
swissprot - B7ZBI5
swissprot - B7ZBI4
swissprot - Q9P218
Ensembl - ENSG00000101203
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL20A1ENSGALG00000005797Gallus gallus
 Q923P0ENSMUSG00000016356Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q05707 / COL14A1 / collagen type XIV alpha 1 chainENSG0000018795538
Q99715 / COL12A1 / collagen type XII alpha 1 chainENSG0000011179936
COL7A1 / Q02388 / collagen type VII alpha 1 chainENSG0000011427027
COL6A3 / P12111 / collagen type VI alpha 3 chainENSG0000016335918
A6NMZ7 / COL6A6 / collagen type VI alpha 6 chainENSG0000020638415
A8TX70 / COL6A5 / collagen type VI alpha 5 chainENSG0000017275215
VWA2 / Q5GFL6 / von Willebrand factor A domain containing 2ENSG0000016581610
VIT / Q6UXI7 / vitrinENSG000002052213
COCH / O43405 / cochlinENSG000001004732


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036116  Fibronectin type III superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix TAS
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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