ENSGALG00000005797


Gallus gallus

Features
Gene ID: ENSGALG00000005797
  
Biological name :COL20A1
  
Synonyms : COL20A1 / collagen type XX alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XX) chain / Q923P0 / Q9P218
  
Species: Gallus gallus
  
Chr. number: 20
Strand: 1
Band:
Gene start: 9022635
Gene end: 9065766
  
Corresponding Affymetrix probe sets: Gga.968.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009298
NCBI entrez gene - 419243     See in Manteia.
RefSeq - NM_001004392
RefSeq - XM_015296388
RefSeq Peptide - NP_001004392
swissprot - F1NAB9
Ensembl - ENSGALG00000005797
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9P218ENSG00000101203Homo sapiens
 Q923P0ENSMUSG00000016356Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL14A1 / collagen alpha-1(XIV) chain precursor / Q80X19* / Q05707* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSGALG0000003767540
COL12A1 / collagen type XII alpha 1 chain / Q60847* / Q99715* / Collagen alpha-1(XII) chain *ENSGALG0000001590836
COL6A3 / collagen type VI alpha 3 chain / P12111* / collagen, type VI, alpha 3*ENSGALG0000000392316
COL7A1* / Q02388* / Q63870* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSGALG0000000581113
VWA2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSGALG000000089809
VIT / vitrin precursor / Q6UXI7* / Q8VHI5* / vitrin*ENSGALG000000105832
ENSGALG000000358541
COCH / O42163 / Cochlin / O43405* / Q62507*ENSGALG000000099201


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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