ENSGALG00000009920


Gallus gallus

Features
Gene ID: ENSGALG00000009920
  
Biological name :COCH
  
Synonyms : COCH / Cochlin / O42163
  
Possible biological names infered from orthology : O43405 / Q62507
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 34263828
Gene end: 34280520
  
Corresponding Affymetrix probe sets: Gga.2805.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016113
NCBI entrez gene - 395779     See in Manteia.
RefSeq - XM_015287284
RefSeq - NM_204937
RefSeq Peptide - NP_990268
swissprot - R9PXN6
swissprot - O42163
Ensembl - ENSGALG00000009920
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cochENSDARG00000024032Danio rerio
 COCHENSG00000100473Homo sapiens
 CochENSMUSG00000020953Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VIT / vitrin precursor / Q6UXI7* / Q8VHI5* / vitrin*ENSGALG0000001058343
COL6A3 / collagen type VI alpha 3 chain / P12111* / collagen, type VI, alpha 3*ENSGALG0000000392321
COL12A1 / collagen type XII alpha 1 chain / Q60847* / Q99715* / Collagen alpha-1(XII) chain *ENSGALG0000001590818
COL14A1 / collagen alpha-1(XIV) chain precursor / Q80X19* / Q05707* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSGALG0000003767516
VWA2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSGALG0000000898011
COL7A1* / Q02388* / Q63870* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSGALG000000058116
COL20A1 / collagen type XX alpha 1 chain / Q923P0* / Q9P218* / Collagen alpha-1(XX) chain *ENSGALG000000057972
ENSGALG000000358541


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR004043  LCCL domain
 IPR030743  Cochlin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0042742 defense response to bacterium IEA
 biological_processGO:0045089 positive regulation of innate immune response IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0031012 extracellular matrix ISS
 molecular_functionGO:0005518 collagen binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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