ENSG00000114270


Homo sapiens

Features
Gene ID: ENSG00000114270
  
Biological name :COL7A1
  
Synonyms : COL7A1 / collagen type VII alpha 1 chain / Q02388
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.31
Gene start: 48564073
Gene end: 48595267
  
Corresponding Affymetrix probe sets: 204136_at (Human Genome U133 Plus 2.0 Array)   217312_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000391608
Ensembl peptide - ENSP00000332371
NCBI entrez gene - 1294     See in Manteia.
OMIM - 120120
RefSeq - XM_017005692
RefSeq - NM_000094
RefSeq - XM_017005689
RefSeq - XM_017005690
RefSeq - XM_017005691
RefSeq - XM_011533337
RefSeq - XM_017005688
RefSeq Peptide - NP_000085
swissprot - Q02388
swissprot - C9JBL3
Ensembl - ENSG00000114270
  
Related genetic diseases (OMIM): 226600 - EBD inversa, 226600
  132000 - EBD, Bart type, 132000
  120120 - EBD, localisata variant
  131750 - Epidermolysis bullosa dystrophica, AD, 131750
  604129 - Epidermolysis bullosa pruriginosa, 604129
  131850 - Epidermolysis bullosa, pretibial, 131850
  607523 - Toenail dystrophy, isolated, 607523
  131705 - Transient bullous of the newborn, 131705
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col7a1ENSDARG00000021720Danio rerio
 ENSGALG00000005811Gallus gallus
 Col7a1ENSMUSG00000025650Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q99715 / COL12A1 / collagen type XII alpha 1 chainENSG0000011179918
Q05707 / COL14A1 / collagen type XIV alpha 1 chainENSG0000018795517
COL6A3 / P12111 / collagen type VI alpha 3 chainENSG0000016335916
A8TX70 / COL6A5 / collagen type VI alpha 5 chainENSG0000017275213
A6NMZ7 / COL6A6 / collagen type VI alpha 6 chainENSG0000020638412
Q9P218 / COL20A1 / collagen type XX alpha 1 chainENSG0000010120312
VWA2 / Q5GFL6 / von Willebrand factor A domain containing 2ENSG000001658166
VIT / Q6UXI7 / vitrinENSG000002052213
COCH / O43405 / cochlinENSG000001004732


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013783  Immunoglobulin-like fold
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site
 IPR036116  Fibronectin type III superfamily
 IPR036465  von Willebrand factor A-like domain superfamily
 IPR036880  Pancreatic trypsin inhibitor Kunitz domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport TAS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0008544 epidermis development TAS
 biological_processGO:0010466 negative regulation of peptidase activity IEA
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0035987 endodermal cell differentiation IEP
 biological_processGO:0048208 COPII vesicle coating TAS
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005590 collagen type VII trimer TAS
 cellular_componentGO:0005604 basement membrane TAS
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0030134 COPII-coated ER to Golgi transport vesicle TAS
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane TAS
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030414 peptidase inhibitor activity IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Extracellular matrix organization
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
COPII-mediated vesicle transport
Integrin cell surface interactions
Anchoring fibril formation
Laminin interactions
Cargo concentration in the ER
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000016 Urinary retention 
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 HP:0000083 Renal failure 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000142 Abnormality of the vagina 
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000171 Microglossia 
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 HP:0000365 Hearing loss 
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 HP:0000402 Stenotic external auditory canal "An abnormal narrowing of the external auditory canal." [HPO:curators]
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 HP:0000491 Keratitis "Inflammation of the cornea." [HPO:curators]
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 HP:0000498 Blepharitis "Inflammation of the eyelids." [HPO:curators]
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 HP:0000509 Conjunctivitis "Inflammation of the conjunctiva." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000529 Progressive visual loss 
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 HP:0000559 Corneal scarring 
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 HP:0000572 Visual loss 
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 HP:0000656 Ectropion "An abnormal turning outward of the lower eyelid." [HPO:sdoelken]
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 HP:0000670 Carious teeth 
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 HP:0000823 Delayed puberty 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000951 Abnormality of the skin "An abnormality of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0000962 Hyperkeratosis "Hyperkeratosis is thickening of the outer layer of the skin, the stratum corneum, which is composed of large, polyhedral, plate-like envelopes filled with keratin which are the dead cells that have migrated up from the stratum granulosum." [HPO:curators]
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 HP:0000963 Thin skin 
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 HP:0000987 Scarring 
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 HP:0000989 Pruritus "Pruritus is an itch or a sensation that makes a person want to scratch. This term refers to an abnormally increased disposition to experience pruritus." [HPO:curators]
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 HP:0001030 Fragile skin 
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001056 Milia 
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 HP:0001057 Aplasia cutis congenita "A developmental defect resulting in the congenital absence of skin in multiple or solitary non-inflammatory, well-demarcated, oval or circular ulcers with a diameter of about 1 to 2 cm. Aplasia cutis congenita most commonly occurs on the scalp, but may present in the face, trunk, or limbs." [HPO:curators]
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 HP:0001075 Atrophic scars 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001371 Contractures 
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001581 Recurrent skin infections "Infections of the skin that happen multiple times." [HPO:curators]
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001644 Dilated cardiomyopathy 
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 HP:0001802 Absent toenails 
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 HP:0001810 Dystrophic toenails 
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 HP:0001817 Absent fingernails 
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 HP:0001903 Anemia 
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 HP:0001939 Metabolism abnormality 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002043 Esophageal stricture 
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 HP:0002164 Nail dysplasia 
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 HP:0002860 Squamous cell carcinoma 
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0004057 Mitten deformity 
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 HP:0004334 Dermal atrophy "Partial or complete wasting (atrophy) of the skin." [HPO:curators]
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 HP:0004378 Abnormality of the anus "Abnormality of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0004395 Malnutrition 
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 HP:0004552 scarring alopecia of scalp 
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 HP:0005203 Spontaneous esophageal perforation 
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 HP:0005505 Refractory anemia 
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 HP:0006297 Hypoplastic dental enamel 
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 HP:0006739 Squamous cell carcinoma of the skin "Squamous cell carcinoma of the skin is a malignant tumor of squamous epithelium." [HPO:curators]
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 HP:0007383 Congenital localized absence of skin 
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 HP:0008066 Abnormal blistering of the skin 
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 HP:0008388 Abnormality of the toenails 
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 HP:0008391 Mildly dystrophic fingernails 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0010296 Ankyloglossia "Short or anteriorly attached lingual frenulum associated with limited mobility of the tongue." [pmid:19125428]
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 HP:0011457 Loss of eyelashes "This term refers to the loss of eyelashes that were previously present." [HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012221 Pretibial blistering "A type of blistering that affects the skin of the tibial region." [HPO:probinson, pmid:15265795]
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 HP:0012227 Urethral stricture "Narrowing of the urethra associated with inflammation or scar tissue." [HPO:probinson]
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 HP:0012473 Tongue atrophy "Wasting of the `tongue` (FMA:54640)." [ORCID:0000-0001-5208-3432]
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 HP:0100825 Cheilitis "Inflammation of the lip." [HPO:sdoelken]
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 HP:0200020 Corneal erosions "Erosions or Abbrasions of the cornea s outermost layer of epithelial cells." [HPO:sdoelken]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200036 skin nodules "Morphologically similar to a papule, but greater than either 10mm in both width and depth, and most frequently centered in the dermis or subcutaneous fat." [HPO:SKOEHLER]
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 HP:0200037 skin vesicle "A circumscribed, fluid-containing, epidermal elevation generally considered less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200041 skin erosion "A discontinuity of the skin exhibiting incomplete loss of the epidermis, a lesion that is moist, circumscribed, and usually depressed." [HPO:SKOEHLER]
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 HP:0200097 Oral mucusa blisters 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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