ENSG00000206384


Homo sapiens

Features
Gene ID: ENSG00000206384
  
Biological name :COL6A6
  
Synonyms : A6NMZ7 / COL6A6 / collagen type VI alpha 6 chain
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q22.1
Gene start: 130560334
Gene end: 130678155
  
Corresponding Affymetrix probe sets: 230867_at (Human Genome U133 Plus 2.0 Array)   242641_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000426006
Ensembl peptide - ENSP00000351310
Ensembl peptide - ENSP00000422921
NCBI entrez gene - 131873     See in Manteia.
OMIM - 616613
RefSeq - XM_017005716
RefSeq - XM_017005712
RefSeq - XM_017005713
RefSeq - XM_017005714
RefSeq - XM_017005715
RefSeq - NM_001102608
RefSeq - XM_005247121
RefSeq - XM_011512423
RefSeq - XM_011512424
RefSeq - XM_011512425
RefSeq - XM_011512426
RefSeq - XM_011512428
RefSeq - XM_011512431
RefSeq - XM_011512432
RefSeq - XM_017005711
RefSeq Peptide - NP_001096078
swissprot - H0Y940
swissprot - H0YA33
swissprot - A6NMZ7
Ensembl - ENSG00000206384
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-62a1.3ENSDARG00000112419Danio rerio
 Col6a6ENSMUSG00000043719Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A8TX70 / COL6A5 / collagen type VI alpha 5 chainENSG0000017275254
COL6A3 / P12111 / collagen type VI alpha 3 chainENSG0000016335932
COL7A1 / Q02388 / collagen type VII alpha 1 chainENSG0000011427016
Q99715 / COL12A1 / collagen type XII alpha 1 chainENSG0000011179914
Q05707 / COL14A1 / collagen type XIV alpha 1 chainENSG0000018795514
Q9P218 / COL20A1 / collagen type XX alpha 1 chainENSG000001012038
VIT / Q6UXI7 / vitrinENSG000002052217
VWA2 / Q5GFL6 / von Willebrand factor A domain containing 2ENSG000001658165
COCH / O43405 / cochlinENSG000001004735


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030574 collagen catabolic process TAS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0031012 extracellular matrix IDA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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