ENSMUSG00000047242


Mus musculus

Features
Gene ID: ENSMUSG00000047242
  
Biological name :Taf9b
  
Synonyms : Q6NZA9 / Taf9b / Transcription initiation factor TFIID subunit 9B
  
Possible biological names infered from orthology : Q9HBM6 / TATA-box binding protein associated factor 9b
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: D
Gene start: 106206883
Gene end: 106221158
  
Corresponding Affymetrix probe sets: 10606315 (MoGene1.0st)   1434960_at (Mouse Genome 430 2.0 Array)   1447829_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000109123
Ensembl peptide - ENSMUSP00000115178
Ensembl peptide - ENSMUSP00000059751
NCBI entrez gene - 407786     See in Manteia.
MGI - MGI:3039562
RefSeq - NM_001167988
RefSeq - NM_001001176
RefSeq Peptide - NP_001001176
RefSeq Peptide - NP_001161460
swissprot - Q6NZA9
swissprot - A2AP82
swissprot - A2AP81
Ensembl - ENSMUSG00000047242
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf9ENSDARG00000077870Danio rerio
 TAF9ENSGALG00000004187Gallus gallus
 TAF9BENSG00000187325Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ak6 / Q8VCP8 / Q8VI33 / Adenylate kinase isoenzyme 6 / TAF9* / Q16594* / TATA-box binding protein associated factor 9*ENSMUSG0000007894166
Taf9 / Q8VI33 / Transcription initiation factor TFIID subunit 9 / Q16594* / TATA-box binding protein associated factor 9*ENSMUSG0000005229366


Protein motifs (from Interpro)
Interpro ID Name
 IPR003162  Transcription initiation factor TAFII31
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0030307 positive regulation of cell growth IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043966 histone H3 acetylation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0050821 protein stabilization IEA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0000124 SAGA complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0033276 transcription factor TFTC complex IEA
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0004402 histone acetyltransferase activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Mov10l1tm1.2Jw/Mov10l1tm1.2Jw
Genetic Background: involves: 129S4/SvJae * C57BL/6 * FVB/N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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