ENSDARG00000077870


Danio rerio

Features
Gene ID: ENSDARG00000077870
  
Biological name :taf9
  
Synonyms : taf9 / TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : Adenylate kinase isoenzyme 6 / Ak6 / Q16594 / Q6NZA9 / Q8VCP8 / Q8VI33 / Q9HBM6 / TAF9B / TATA-box binding protein associated factor 9 / TATA-box binding protein associated factor 9b / Transcription initiation factor TFIID subunit 9 / Transcription initiation factor TFIID subunit 9B
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 38724046
Gene end: 38730641
  
Corresponding Affymetrix probe sets: Dr.1499.1.S1_at (Zebrafish Array)   NM_001044395_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125853
Ensembl peptide - ENSDARP00000098102
NCBI entrez gene - 321485     See in Manteia.
RefSeq - NM_001044395
RefSeq Peptide - NP_001037860
swissprot - I3ISH2
swissprot - F1QDT4
ZFIN ID - ZDB-GENE-030131-204
Ensembl - ENSDARG00000077870
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF9ENSGALG00000004187Gallus gallus
 TAF9ENSG00000273841Homo sapiens
 TAF9BENSG00000187325Homo sapiens
 Ak6ENSMUSG00000078941Mus musculus
 Taf9ENSMUSG00000052293Mus musculus
 Taf9bENSMUSG00000047242Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003162  Transcription initiation factor TAFII31
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0043966 histone H3 acetylation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 cellular_componentGO:0000124 SAGA complex IBA
 cellular_componentGO:0005669 transcription factor TFIID complex IBA
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0004402 histone acetyltransferase activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Ub-specific processing proteases
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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