ENSMUSG00000052293


Mus musculus

Features
Gene ID: ENSMUSG00000052293
  
Biological name :Taf9
  
Synonyms : Q8VI33 / Taf9 / Transcription initiation factor TFIID subunit 9
  
Possible biological names infered from orthology : Q16594 / TATA-box binding protein associated factor 9
  
Species: Mus musculus
  
Chr. number: 13
Strand: 1
Band: D1
Gene start: 100651579
Gene end: 100656060
  
Corresponding Affymetrix probe sets: 10512061 (MoGene1.0st)   1422778_at (Mouse Genome 430 2.0 Array)   1438250_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000139407
Ensembl peptide - ENSMUSP00000140423
Ensembl peptide - ENSMUSP00000140244
Ensembl peptide - ENSMUSP00000140051
Ensembl peptide - ENSMUSP00000132143
NCBI entrez gene - 108143     See in Manteia.
MGI - MGI:1888697
RefSeq - NM_001015889
RefSeq Peptide - NP_001015889
swissprot - A0A087WQ57
swissprot - A0A087WNM2
swissprot - A0A087WR08
swissprot - Q8VI33
Ensembl - ENSMUSG00000052293
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf9ENSDARG00000077870Danio rerio
 TAF9ENSGALG00000004187Gallus gallus
 TAF9ENSG00000273841Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ak6 / Q8VCP8 / Q8VI33 / Adenylate kinase isoenzyme 6 / TAF9* / Q16594* / TATA-box binding protein associated factor 9*ENSMUSG00000078941100
Taf9b / Q6NZA9 / Transcription initiation factor TFIID subunit 9B / Q9HBM6* / TATA-box binding protein associated factor 9b*ENSMUSG0000004724273


Protein motifs (from Interpro)
Interpro ID Name
 IPR003162  Transcription initiation factor TAFII31
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000492 box C/D snoRNP assembly ISO
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0030307 positive regulation of cell growth ISO
 biological_processGO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process ISO
 biological_processGO:0043066 negative regulation of apoptotic process ISO
 biological_processGO:0043966 histone H3 acetylation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISO
 biological_processGO:0050821 protein stabilization ISO
 biological_processGO:0051123 RNA polymerase II transcriptional preinitiation complex assembly IEA
 biological_processGO:0060760 positive regulation of response to cytokine stimulus ISO
 biological_processGO:0070555 response to interleukin-1 ISO
 cellular_componentGO:0000124 SAGA complex IBA
 cellular_componentGO:0000125 PCAF complex ISO
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005669 transcription factor TFIID complex ISO
 cellular_componentGO:0030914 STAGA complex ISO
 cellular_componentGO:0033276 transcription factor TFTC complex ISO
 cellular_componentGO:0070761 pre-snoRNP complex ISO
 cellular_componentGO:0071339 MLL1 complex ISO
 molecular_functionGO:0001075 transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly IBA
 molecular_functionGO:0002039 p53 binding ISO
 molecular_functionGO:0003677 DNA binding ISO
 molecular_functionGO:0003713 transcription coactivator activity ISO
 molecular_functionGO:0004402 histone acetyltransferase activity IBA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0033613 activating transcription factor binding ISO
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0051117 ATPase binding ISO
 molecular_functionGO:0070742 C2H2 zinc finger domain binding ISO


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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