ENSMUSG00000051663


Mus musculus

Features
Gene ID: ENSMUSG00000051663
  
Biological name :Pcdhb1
  
Synonyms : Pcdhb1 / protocadherin beta 1
  
Possible biological names infered from orthology : Q9Y5F3
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37264938
Gene end: 37267525
  
Corresponding Affymetrix probe sets: 10455048 (MoGene1.0st)   1421631_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000057519
NCBI entrez gene - 93872     See in Manteia.
MGI - MGI:2136730
RefSeq - NM_053126
RefSeq Peptide - NP_444356
swissprot - Q91Y08
Ensembl - ENSMUSG00000051663
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038668Gallus gallus
 ENSGALG00000045780Gallus gallus
 PCDHB1ENSG00000171815Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhb15 / protocadherin beta 15 / PCDHB7* / Q9Y5E2* / protocadherin beta 7*ENSMUSG0000004703349
Q6PB90 / Pcdhb14 / Protocadherin beta-14 ENSMUSG0000004404349
Pcdhb2 / protocadherin beta 2 / Q9Y5E7*ENSMUSG0000005159948
Pcdhb4 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004568948
Pcdhb5 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000006368748
Pcdhb3 / protocadherin beta 3 / Q9Y5E6*ENSMUSG0000004549848
Pcdhb12 / protocadherin beta 12 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004345848
Pcdhb17 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004638748
Pcdhb22 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000007359147
Q91Y02 / Pcdhb18 / Protocadherin beta-18 / PCDHB9* / Q9UN67* / Q9Y5E1* / PCDHB10* / protocadherin beta 9* / protocadherin beta 10*ENSMUSG0000004834747
Pcdhb6 / Q91XZ4 / Protocadherin beta-6 / Q9Y5E4* / PCDHB5* / protocadherin beta 5*ENSMUSG0000005167847
Pcdhb11 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000005148647
Pcdhb10 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004565747
Pcdhb13 / protocadherin beta 13 / PCDHB6* / Q9Y5E3* / protocadherin beta 6*ENSMUSG0000004730747
Pcdhb21 / protocadherin beta 21ENSMUSG0000004402247
Pcdhb8 / Q91XZ2 / Protocadherin beta-8 / Q9Y5E4* / PCDHB5* / protocadherin beta 5*ENSMUSG0000004587647
Pcdhb9 / protocadherin beta 9 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000005124247
Pcdhb7 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000004506247
Pcdhb20 / protocadherin beta 20 / Q9Y5E9* / PCDHB14* / protocadherin beta 14*ENSMUSG0000004619147
Pcdhb16 / Q9Y5F0* / PCDHB8* / Q9UN66* / PCDHB13* / protocadherin beta 8* / protocadherin beta 13*ENSMUSG0000004791046


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030723  Protocadherin beta-1
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007268 chemical synaptic transmission IBA
 biological_processGO:0007416 synapse assembly IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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