ENSG00000171815


Homo sapiens

Features
Gene ID: ENSG00000171815
  
Biological name :PCDHB1
  
Synonyms : PCDHB1 / protocadherin beta 1 / Q9Y5F3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141051135
Gene end: 141059344
  
Corresponding Affymetrix probe sets: 221303_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000307234
NCBI entrez gene - 29930     See in Manteia.
OMIM - 606327
RefSeq - NM_013340
RefSeq Peptide - NP_037472
swissprot - Q9Y5F3
Ensembl - ENSG00000171815
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038668Gallus gallus
 ENSGALG00000045780Gallus gallus
 Pcdhb1ENSMUSG00000051663Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321251
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320950
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320550
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285250
Q9UN67 / PCDHB10 / protocadherin beta 10ENSG0000012032450
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032750
PCDHB6 / Q9Y5E3 / protocadherin beta 6ENSG0000011321149
PCDHB4 / Q9Y5E5 / protocadherin beta 4ENSG0000008181849
Q9NRJ7 / PCDHB16 / protocadherin beta 16ENSG0000027267449
Q9Y5F2 / PCDHB11 / protocadherin beta 11ENSG0000019747949
Q9Y5F1 / PCDHB12 / protocadherin beta 12ENSG0000012032849
Q9Y5F0 / PCDHB13 / protocadherin beta 13ENSG0000018737249
PCDHB9 / Q9Y5E1 / protocadherin beta 9ENSG0000017783949
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032249
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330540
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495640
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391040
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422139
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395339
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193439


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030723  Protocadherin beta-1
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007268 chemical synaptic transmission IBA
 biological_processGO:0007416 synapse assembly IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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