ENSG00000187372


Homo sapiens

Features
Gene ID: ENSG00000187372
  
Biological name :PCDHB13
  
Synonyms : PCDHB13 / protocadherin beta 13 / Q9Y5F0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141213919
Gene end: 141218979
  
Corresponding Affymetrix probe sets: 221450_x_at (Human Genome U133 Plus 2.0 Array)   232415_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000345491
NCBI entrez gene - 56123     See in Manteia.
OMIM - 606339
RefSeq - NM_018933
RefSeq Peptide - NP_061756
swissprot - Q9Y5F0
Ensembl - ENSG00000187372
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038668Gallus gallus
 ENSGALG00000045780Gallus gallus
 Pcdhb16ENSMUSG00000047910Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032292
Q9NRJ7 / PCDHB16 / protocadherin beta 16ENSG0000027267477
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320575
Q9Y5F1 / PCDHB12 / protocadherin beta 12ENSG0000012032874
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285274
Q9Y5F2 / PCDHB11 / protocadherin beta 11ENSG0000019747974
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032774
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320974
PCDHB4 / Q9Y5E5 / protocadherin beta 4ENSG0000008181873
PCDHB9 / Q9Y5E1 / protocadherin beta 9ENSG0000017783973
PCDHB6 / Q9Y5E3 / protocadherin beta 6ENSG0000011321173
Q9UN67 / PCDHB10 / protocadherin beta 10ENSG0000012032473
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321272
PCDHB1 / Q9Y5F3 / protocadherin beta 1ENSG0000017181550
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391046
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654745
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495645
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395345
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193445
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422144


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007416 synapse assembly TAS
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules NAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane NAS
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr