ENSG00000276547


Homo sapiens

Features
Gene ID: ENSG00000276547
  
Biological name :PCDHGB5
  
Synonyms : PCDHGB5 / protocadherin gamma subfamily B, 5 / Q9Y5G0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141397987
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211807_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000478258
Ensembl peptide - ENSP00000484888
NCBI entrez gene - 56101     See in Manteia.
OMIM - 606302
RefSeq - NM_018925
RefSeq - NM_032099
RefSeq Peptide - NP_061748
RefSeq Peptide - NP_115270
swissprot - Q9Y5G0
Ensembl - ENSG00000276547
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CT737184.2ENSDARG00000112930Danio rerio
 pcdh1g1ENSDARG00000104007Danio rerio
 pcdh1g11ENSDARG00000101665Danio rerio
 pcdh1g13ENSDARG00000098963Danio rerio
 pcdh1g14ENSDARG00000104057Danio rerio
 ENSGALG00000038029Gallus gallus
 Pcdhgb5ENSMUSG00000103749Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395384
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330573
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422172
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391071
Q9Y5F8 / PCDHGB7 / protocadherin gamma subfamily B, 7ENSG0000025412271
Q9Y5G1 / PCDHGB3 / protocadherin gamma subfamily B, 3ENSG0000026220969
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495651
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193451
Q9Y5F6 / PCDHGC5 / protocadherin gamma subfamily C, 5ENSG0000024076445
Q9UN70 / PCDHGC3 / protocadherin gamma subfamily C, 3ENSG0000024018444
Q9Y5F7 / PCDHGC4 / protocadherin gamma subfamily C, 4ENSG0000024241943
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032740
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320940
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032240
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285240
Q9Y5F1 / PCDHB12 / protocadherin beta 12ENSG0000012032839
Q9UN67 / PCDHB10 / protocadherin beta 10ENSG0000012032439
PCDHB4 / Q9Y5E5 / protocadherin beta 4ENSG0000008181839
Q9Y5F0 / PCDHB13 / protocadherin beta 13ENSG0000018737239
Q9Y5F2 / PCDHB11 / protocadherin beta 11ENSG0000019747939


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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