ENSG00000240184


Homo sapiens

Features
Gene ID: ENSG00000240184
  
Biological name :PCDHGC3
  
Synonyms : PCDHGC3 / protocadherin gamma subfamily C, 3 / Q9UN70
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141475947
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   214563_at (Human Genome U133 Plus 2.0 Array)   214564_s_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000481219
Ensembl peptide - ENSP00000484352
Ensembl peptide - ENSP00000483383
Ensembl peptide - ENSP00000481673
Ensembl peptide - ENSP00000312070
NCBI entrez gene - 5098     See in Manteia.
OMIM - 603627
RefSeq - NM_002588
RefSeq - NM_032402
RefSeq - NM_032403
RefSeq Peptide - NP_002579
RefSeq Peptide - NP_115779
RefSeq Peptide - NP_115778
swissprot - Q9UN70
swissprot - A0A087WYB5
swissprot - Q9BR81
swissprot - A0A087X1P2
Ensembl - ENSG00000240184
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX957322.1ENSDARG00000089562Danio rerio
 pcdhbENSDARG00000077023Danio rerio
 si:ch73-233f7.3ENSDARG00000102198Danio rerio
 si:ch73-233f7.4ENSDARG00000098566Danio rerio
 si:ch73-233f7.6ENSDARG00000101667Danio rerio
 si:ch73-233f7.7ENSDARG00000099487Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391047
Q9Y5F7 / PCDHGC4 / protocadherin gamma subfamily C, 4ENSG0000024241946
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395346
Q9Y5F6 / PCDHGC5 / protocadherin gamma subfamily C, 5ENSG0000024076446
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193446
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495646
Q9Y5F8 / PCDHGB7 / protocadherin gamma subfamily B, 7ENSG0000025412246
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422146
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330545
Q9Y5G1 / PCDHGB3 / protocadherin gamma subfamily B, 3ENSG0000026220945
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654743
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032233
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285232
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320532
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320932
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032732
Q9Y5F0 / PCDHB13 / protocadherin beta 13ENSG0000018737232
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321232
PCDHB4 / Q9Y5E5 / protocadherin beta 4ENSG0000008181831
PCDHB1 / Q9Y5F3 / protocadherin beta 1ENSG0000017181531


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030728  Protocadherin gamma-C3
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules NAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane NAS
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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