ENSG00000240764


Homo sapiens

Features
Gene ID: ENSG00000240764
  
Biological name :PCDHGC5
  
Synonyms : PCDHGC5 / protocadherin gamma subfamily C, 5 / Q9Y5F6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141489121
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   224536_s_at (Human Genome U133 Plus 2.0 Array)   224537_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000252087
Ensembl peptide - ENSP00000482569
NCBI entrez gene - 56097     See in Manteia.
OMIM - 606306
RefSeq - NM_018929
RefSeq - NM_032407
RefSeq Peptide - NP_061752
RefSeq Peptide - NP_115783
swissprot - Q9Y5F6
Ensembl - ENSG00000240764
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1g26ENSDARG00000099931Danio rerio
 pcdh1g29ENSDARG00000104497Danio rerio
 pcdh1g33ENSDARG00000099035Danio rerio
 pcdh1gc5ENSDARG00000104826Danio rerio
 pcdh1gc6ENSDARG00000103950Danio rerio
 Pcdhgc5ENSMUSG00000102543Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5F7 / PCDHGC4 / protocadherin gamma subfamily C, 4ENSG0000024241952
Q9Y5F8 / PCDHGB7 / protocadherin gamma subfamily B, 7ENSG0000025412247
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193447
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422147
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395347
Q9Y5G1 / PCDHGB3 / protocadherin gamma subfamily B, 3ENSG0000026220946
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330546
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391046
Q9UN70 / PCDHGC3 / protocadherin gamma subfamily C, 3ENSG0000024018446
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495645
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654744
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321236
Q9Y5F0 / PCDHB13 / protocadherin beta 13ENSG0000018737235
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032735
PCDHB9 / Q9Y5E1 / protocadherin beta 9ENSG0000017783934
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032234
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320534
Q9NRJ7 / PCDHB16 / protocadherin beta 16ENSG0000027267434
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320934
Q9Y5F2 / PCDHB11 / protocadherin beta 11ENSG0000019747934


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0050808 synapse organization IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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