ENSMUSG00000102543


Mus musculus

Features
Gene ID: ENSMUSG00000102543
  
Biological name :Pcdhgc5
  
Synonyms : Pcdhgc5 / protocadherin gamma subfamily C, 5
  
Possible biological names infered from orthology : Q9Y5F6
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37819513
Gene end: 37841873
  
Corresponding Affymetrix probe sets: 1423628_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000060949
Ensembl peptide - ENSMUSP00000142214
Ensembl peptide - ENSMUSP00000141256
NCBI entrez gene - 93708     See in Manteia.
MGI - MGI:1935205
RefSeq - NM_033583
RefSeq Peptide - NP_291061
swissprot - A0A0A6YXZ9
swissprot - A0A0A6YVT4
swissprot - Q91XW9
Ensembl - ENSMUSG00000102543
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1g26ENSDARG00000099931Danio rerio
 pcdh1g29ENSDARG00000104497Danio rerio
 pcdh1g33ENSDARG00000099035Danio rerio
 pcdh1gc5ENSDARG00000104826Danio rerio
 pcdh1gc6ENSDARG00000103950Danio rerio
 Q9Y5F6ENSG00000240764Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhgc4 / protocadherin gamma subfamily C, 4 / Q9Y5F7*ENSMUSG0000002303653
Pcdhgb1 / protocadherin gamma subfamily B, 1 / Q9Y5G3*ENSMUSG0000010303748
Pcdhga12ENSMUSG0000010242848
Pcdhga2 / protocadherin gamma subfamily A, 2ENSMUSG0000010333248
Pcdhgb7 / protocadherin gamma subfamily B, 7 / Q9Y5F8*ENSMUSG0000010406348
Pcdhgb5 / protocadherin gamma subfamily B, 5 / Q9Y5G0*ENSMUSG0000010374947
Pcdhgb4 / protocadherin gamma subfamily B, 4 / Q9UN71*ENSMUSG0000010358547
Pcdhgb2 / protocadherin gamma subfamily B, 2 / Q9Y5G2*ENSMUSG0000010274847
Pcdhgb8 / protocadherin gamma subfamily B, 8ENSMUSG0000010308147
Pcdhga1 / protocadherin gamma subfamily A, 1 / Q9Y5H4*ENSMUSG0000010314446
O88689 / Gm42416 / predicted gene, 42416ENSMUSG0000010345846
Pcdhgb6 / protocadherin gamma subfamily B, 6 / Q9Y5F9*ENSMUSG0000010308846
Pcdhb15 / protocadherin beta 15 / PCDHB7* / Q9Y5E2* / protocadherin beta 7*ENSMUSG0000004703335
Pcdhb20 / protocadherin beta 20 / Q9Y5E9* / PCDHB14* / protocadherin beta 14*ENSMUSG0000004619135
Pcdhb16 / Q9Y5F0* / PCDHB8* / Q9UN66* / PCDHB13* / protocadherin beta 8* / protocadherin beta 13*ENSMUSG0000004791034
Pcdhb21 / protocadherin beta 21ENSMUSG0000004402234
Q6PB90 / Pcdhb14 / Protocadherin beta-14 ENSMUSG0000004404334
Pcdhb22 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000007359134
Pcdhb17 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004638733
Pcdhb12 / protocadherin beta 12 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004345833


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030728  Protocadherin gamma-C3
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0050808 synapse organization IGI
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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