ENSMUSG00000103144


Mus musculus

Features
Gene ID: ENSMUSG00000103144
  
Biological name :Pcdhga1
  
Synonyms : Pcdhga1 / protocadherin gamma subfamily A, 1
  
Possible biological names infered from orthology : Q9Y5H4
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37661793
Gene end: 37841873
  
Corresponding Affymetrix probe sets: 1423628_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142062
Ensembl peptide - ENSMUSP00000141367
NCBI entrez gene - 93709     See in Manteia.
MGI - MGI:1935212
RefSeq - NM_033584
RefSeq Peptide - NP_291062
swissprot - A0A0A6YW27
swissprot - Q91XZ0
Ensembl - ENSMUSG00000103144
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CT737184.2ENSDARG00000112930Danio rerio
 pcdh1g1ENSDARG00000104007Danio rerio
 pcdh1g11ENSDARG00000101665Danio rerio
 pcdh1g13ENSDARG00000098963Danio rerio
 pcdh1g14ENSDARG00000104057Danio rerio
 Q9Y5H4ENSG00000204956Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhga2 / protocadherin gamma subfamily A, 2ENSMUSG0000010333273
Pcdhga12ENSMUSG0000010242871
Pcdhgb8 / protocadherin gamma subfamily B, 8ENSMUSG0000010308152
Pcdhgb2 / protocadherin gamma subfamily B, 2 / Q9Y5G2*ENSMUSG0000010274852
Pcdhgb5 / protocadherin gamma subfamily B, 5 / Q9Y5G0*ENSMUSG0000010374951
Pcdhgb7 / protocadherin gamma subfamily B, 7 / Q9Y5F8*ENSMUSG0000010406351
Pcdhgb4 / protocadherin gamma subfamily B, 4 / Q9UN71*ENSMUSG0000010358551
Pcdhgb1 / protocadherin gamma subfamily B, 1 / Q9Y5G3*ENSMUSG0000010303751
Pcdhgb6 / protocadherin gamma subfamily B, 6 / Q9Y5F9*ENSMUSG0000010308851
Pcdhgc5 / protocadherin gamma subfamily C, 5 / Q9Y5F6*ENSMUSG0000010254347
Pcdhgc4 / protocadherin gamma subfamily C, 4 / Q9Y5F7*ENSMUSG0000002303646
O88689 / Gm42416 / predicted gene, 42416ENSMUSG0000010345846
Pcdhb1 / protocadherin beta 1 / Q9Y5F3*ENSMUSG0000005166337
Pcdhb12 / protocadherin beta 12 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004345836
Pcdhb5 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000006368736
Pcdhb13 / protocadherin beta 13 / PCDHB6* / Q9Y5E3* / protocadherin beta 6*ENSMUSG0000004730736
Pcdhb10 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004565736
Q91Y02 / Pcdhb18 / Protocadherin beta-18 / PCDHB9* / Q9UN67* / Q9Y5E1* / PCDHB10* / protocadherin beta 9* / protocadherin beta 10*ENSMUSG0000004834736
Pcdhb20 / protocadherin beta 20 / Q9Y5E9* / PCDHB14* / protocadherin beta 14*ENSMUSG0000004619136
Pcdhb7 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000004506236


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030736  Protocadherin gamma-A1
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: a1R/a1R
Genetic Background: involves: 101/Rl * C3H/Rl

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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