ENSDARG00000104007


Danio rerio

Features
Gene ID: ENSDARG00000104007
  
Biological name :pcdh1g1
  
Synonyms : pcdh1g1 / protocadherin 1 gamma 1
  
Possible biological names infered from orthology : PCDHGA1 / Pcdhga12 / Pcdhga2 / PCDHGA9 / PCDHGB1 / PCDHGB2 / PCDHGB3 / PCDHGB4 / PCDHGB5 / PCDHGB6 / PCDHGB7 / Pcdhgb8 / protocadherin gamma subfamily A, 1 / protocadherin gamma subfamily A, 2 / protocadherin gamma subfamily A, 9 / protocadherin gamma subfamily B, 1 / protocadherin gamma subfamily B, 2 / protocadherin gamma subfamily B, 3 / protocadherin gamma subfamily B, 4 / protocadherin gamma subfamily B, 5 / protocadherin gamma subfamily B, 6 / protocadherin gamma subfamily B, 7 / protocadherin gamma subfamily B, 8 / Q9UN71 / Q9Y5F8 / Q9Y5F9 / Q9Y5G0 / Q9Y5G1 / Q9Y5G2 / Q9Y5G3 / Q9Y5G4 / Q9Y5H4
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 21650828
Gene end: 21820057
  
Corresponding Affymetrix probe sets: Dr.8598.1.A1_at (Zebrafish Array)   NM_001020804_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136773
NCBI entrez gene - 553983     See in Manteia.
RefSeq - NM_001020804
RefSeq Peptide - NP_001018640
swissprot - A0A0R4IP57
ZFIN ID - ZDB-GENE-050608-1
Ensembl - ENSDARG00000104007
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038029Gallus gallus
 Q9UN71ENSG00000253953Homo sapiens
 Q9Y5F8ENSG00000254122Homo sapiens
 Q9Y5F9ENSG00000253305Homo sapiens
 Q9Y5G0ENSG00000276547Homo sapiens
 Q9Y5G1ENSG00000262209Homo sapiens
 Q9Y5G2ENSG00000253910Homo sapiens
 Q9Y5G3ENSG00000254221Homo sapiens
 Q9Y5G4ENSG00000261934Homo sapiens
 Q9Y5H4ENSG00000204956Homo sapiens
 Pcdhga1ENSMUSG00000103144Mus musculus
 Pcdhga12ENSMUSG00000102428Mus musculus
 Pcdhga2ENSMUSG00000103332Mus musculus
 Pcdhgb1ENSMUSG00000103037Mus musculus
 Pcdhgb2ENSMUSG00000102748Mus musculus
 Pcdhgb4ENSMUSG00000103585Mus musculus
 Pcdhgb5ENSMUSG00000103749Mus musculus
 Pcdhgb6ENSMUSG00000103088Mus musculus
 Pcdhgb7ENSMUSG00000104063Mus musculus
 Pcdhgb8ENSMUSG00000103081Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh1g11 / protocadherin 1 gamma 11 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...ENSDARG0000010166551
pcdh1g29 / protocadherin 1 gamma 29 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000010449747
pcdh1gc5 / pcdh1gc6 / protocadherin 1 gamma c 5 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000010482646
pcdh1gc6 / protocadherin 1 gamma c 6 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000010395046
pcdh1g26 / protocadherin 1 gamma 26 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000009993146
pcdh1g33 / protocadherin 1 gamma 33 / Q9Y5F6* / Q9Y5F7* / PCDHGC5* / PCDHGC4* / protocadherin gamma subfamily C, 4* / protocadherin gamma subfamily C, 5*ENSDARG0000009903544
CT737184.2 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / PCDHGA1* / PCDHGA9* / PCDHGB1* / PCDHGB2* / PCDHGB3* / PCDHGB4* / PCDHGB5* ...ENSDARG0000011293037
pcdh1g14 / protocadherin 1 gamma 14 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...ENSDARG0000010405736
pcdh1g13 / protocadherin 1 gamma 13 / Q9Y5H4* / Q9UN71* / Q9Y5F8* / Q9Y5F9* / Q9Y5G0* / Q9Y5G1* / Q9Y5G2* / Q9Y5G3* / Q9Y5G4* / PCDHGB7* / Pcdhgb8* / PCDHGA1* / Pcdhga2* / PCDHGA9* / PCDHGB...ENSDARG0000009896335
BX957322.1 / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000008956232
pcdhb / protocadherin b / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000007702331
si:ch73-233f7.6 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000010166731
si:ch73-233f7.4 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000009856631
si:ch73-233f7.7 / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000009948731
si:ch73-233f7.3 / PCDHGC3 (1 of many) / Q9UN70* / PCDHGC3* / protocadherin gamma subfamily C, 3*ENSDARG0000010219831


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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