ENSG00000254221


Homo sapiens

Features
Gene ID: ENSG00000254221
  
Biological name :PCDHGB1
  
Synonyms : PCDHGB1 / protocadherin gamma subfamily B, 1 / Q9Y5G3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141350102
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000429273
Ensembl peptide - ENSP00000478900
NCBI entrez gene - 56104     See in Manteia.
OMIM - 606299
RefSeq - NM_018922
RefSeq - NM_032095
RefSeq Peptide - NP_061745
RefSeq Peptide - NP_115266
swissprot - Q9Y5G3
Ensembl - ENSG00000254221
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CT737184.2ENSDARG00000112930Danio rerio
 pcdh1g1ENSDARG00000104007Danio rerio
 pcdh1g11ENSDARG00000101665Danio rerio
 pcdh1g13ENSDARG00000098963Danio rerio
 pcdh1g14ENSDARG00000104057Danio rerio
 ENSGALG00000038029Gallus gallus
 Pcdhgb1ENSMUSG00000103037Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391075
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654772
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330572
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395372
Q9Y5G1 / PCDHGB3 / protocadherin gamma subfamily B, 3ENSG0000026220971
Q9Y5F8 / PCDHGB7 / protocadherin gamma subfamily B, 7ENSG0000025412270
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193452
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495652
Q9Y5F6 / PCDHGC5 / protocadherin gamma subfamily C, 5ENSG0000024076448
Q9UN70 / PCDHGC3 / protocadherin gamma subfamily C, 3ENSG0000024018446
Q9Y5F7 / PCDHGC4 / protocadherin gamma subfamily C, 4ENSG0000024241945
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320939
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320539
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321239
PCDHB9 / Q9Y5E1 / protocadherin beta 9ENSG0000017783938
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285238
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032738
PCDHB4 / Q9Y5E5 / protocadherin beta 4ENSG0000008181838
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032238
Q9Y5F1 / PCDHB12 / protocadherin beta 12ENSG0000012032838


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030426 growth cone IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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