ENSG00000113211


Homo sapiens

Features
Gene ID: ENSG00000113211
  
Biological name :PCDHB6
  
Synonyms : PCDHB6 / protocadherin beta 6 / Q9Y5E3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141150022
Gene end: 141153287
  
Corresponding Affymetrix probe sets: 221317_x_at (Human Genome U133 Plus 2.0 Array)   239443_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000485034
Ensembl peptide - ENSP00000231136
NCBI entrez gene - 56130     See in Manteia.
OMIM - 606332
RefSeq - NM_001303145
RefSeq - NM_018939
RefSeq Peptide - NP_001290074
RefSeq Peptide - NP_061762
swissprot - Q9Y5E3
swissprot - A0A096LNH7
Ensembl - ENSG00000113211
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038668Gallus gallus
 ENSGALG00000045780Gallus gallus
 Pcdhb13ENSMUSG00000047307Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320577
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320977
PCDHB4 / Q9Y5E5 / protocadherin beta 4ENSG0000008181877
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285276
Q9NRJ7 / PCDHB16 / protocadherin beta 16ENSG0000027267475
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032775
Q9Y5F0 / PCDHB13 / protocadherin beta 13ENSG0000018737274
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032273
PCDHB9 / Q9Y5E1 / protocadherin beta 9ENSG0000017783973
Q9Y5F2 / PCDHB11 / protocadherin beta 11ENSG0000019747972
Q9UN67 / PCDHB10 / protocadherin beta 10ENSG0000012032472
Q9Y5F1 / PCDHB12 / protocadherin beta 12ENSG0000012032872
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321271
PCDHB1 / Q9Y5F3 / protocadherin beta 1ENSG0000017181550
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495645
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193444
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654744
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422144
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330544
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391043


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007416 synapse assembly TAS
 biological_processGO:0009988 cell-cell recognition ISS
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules NAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0042802 identical protein binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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