ENSG00000253910


Homo sapiens

Features
Gene ID: ENSG00000253910
  
Biological name :PCDHGB2
  
Synonyms : PCDHGB2 / protocadherin gamma subfamily B, 2 / Q9Y5G2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141360042
Gene end: 141512979
  
Corresponding Affymetrix probe sets: 205717_x_at (Human Genome U133 Plus 2.0 Array)   209079_x_at (Human Genome U133 Plus 2.0 Array)   211066_x_at (Human Genome U133 Plus 2.0 Array)   211876_x_at (Human Genome U133 Plus 2.0 Array)   215836_s_at (Human Genome U133 Plus 2.0 Array)   216352_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000429018
Ensembl peptide - ENSP00000481512
NCBI entrez gene - 56103     See in Manteia.
OMIM - 606300
RefSeq - NM_018923
RefSeq - NM_032096
RefSeq Peptide - NP_061746
RefSeq Peptide - NP_115267
swissprot - Q9Y5G2
Ensembl - ENSG00000253910
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CT737184.2ENSDARG00000112930Danio rerio
 pcdh1g1ENSDARG00000104007Danio rerio
 pcdh1g11ENSDARG00000101665Danio rerio
 pcdh1g13ENSDARG00000098963Danio rerio
 pcdh1g14ENSDARG00000104057Danio rerio
 ENSGALG00000038029Gallus gallus
 Pcdhgb2ENSMUSG00000102748Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422175
Q9Y5G1 / PCDHGB3 / protocadherin gamma subfamily B, 3ENSG0000026220971
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330571
Q9Y5F8 / PCDHGB7 / protocadherin gamma subfamily B, 7ENSG0000025412271
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395370
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654770
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193452
Q9Y5H4 / PCDHGA1 / protocadherin gamma subfamily A, 1ENSG0000020495652
Q9UN70 / PCDHGC3 / protocadherin gamma subfamily C, 3ENSG0000024018447
Q9Y5F6 / PCDHGC5 / protocadherin gamma subfamily C, 5ENSG0000024076446
Q9Y5F7 / PCDHGC4 / protocadherin gamma subfamily C, 4ENSG0000024241944
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320939
PCDHB9 / Q9Y5E1 / protocadherin beta 9ENSG0000017783939
Q9Y5F0 / PCDHB13 / protocadherin beta 13ENSG0000018737239
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320539
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032239
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321239
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285238
Q9Y5F2 / PCDHB11 / protocadherin beta 11ENSG0000019747938
Q9UN67 / PCDHB10 / protocadherin beta 10ENSG0000012032438


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr