ENSG00000272674


Homo sapiens

Features
Gene ID: ENSG00000272674
  
Biological name :PCDHB16
  
Synonyms : PCDHB16 / protocadherin beta 16 / Q9NRJ7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 141181399
Gene end: 141186399
  
Corresponding Affymetrix probe sets: 232099_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000477314
Ensembl peptide - ENSP00000485449
NCBI entrez gene - 57717     See in Manteia.
OMIM - 606345
RefSeq - NM_020957
RefSeq Peptide - NP_066008
swissprot - A0A096LP81
swissprot - Q9NRJ7
Ensembl - ENSG00000272674
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000038668Gallus gallus
 ENSGALG00000045780Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5F0 / PCDHB13 / protocadherin beta 13ENSG0000018737279
PCDHB8 / Q9UN66 / protocadherin beta 8ENSG0000012032279
PCDHB3 / Q9Y5E6 / protocadherin beta 3ENSG0000011320578
PCDHB2 / Q9Y5E7 / protocadherin beta 2ENSG0000011285277
PCDHB5 / Q9Y5E4 / protocadherin beta 5ENSG0000011320977
PCDHB6 / Q9Y5E3 / protocadherin beta 6ENSG0000011321177
Q9Y5E9 / PCDHB14 / protocadherin beta 14ENSG0000012032777
Q9Y5F2 / PCDHB11 / protocadherin beta 11ENSG0000019747976
PCDHB4 / Q9Y5E5 / protocadherin beta 4ENSG0000008181876
Q9Y5F1 / PCDHB12 / protocadherin beta 12ENSG0000012032876
PCDHB9 / Q9Y5E1 / protocadherin beta 9ENSG0000017783974
PCDHB7 / Q9Y5E2 / protocadherin beta 7ENSG0000011321274
Q9UN67 / PCDHB10 / protocadherin beta 10ENSG0000012032473
PCDHB1 / Q9Y5F3 / protocadherin beta 1ENSG0000017181552
Q9Y5G0 / PCDHGB5 / protocadherin gamma subfamily B, 5ENSG0000027654746
Q9Y5F9 / PCDHGB6 / protocadherin gamma subfamily B, 6ENSG0000025330545
Q9Y5G2 / PCDHGB2 / protocadherin gamma subfamily B, 2ENSG0000025391045
Q9Y5G3 / PCDHGB1 / protocadherin gamma subfamily B, 1ENSG0000025422145
Q9UN71 / PCDHGB4 / protocadherin gamma subfamily B, 4ENSG0000025395345
Q9Y5G4 / PCDHGA9 / protocadherin gamma subfamily A, 9ENSG0000026193444


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007268 chemical synaptic transmission TAS
 biological_processGO:0007416 synapse assembly TAS
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules NAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane NAS
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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