ENSMUSG00000023036


Mus musculus

Features
Gene ID: ENSMUSG00000023036
  
Biological name :Pcdhgc4
  
Synonyms : Pcdhgc4 / protocadherin gamma subfamily C, 4
  
Possible biological names infered from orthology : Q9Y5F7
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37815079
Gene end: 37841873
  
Corresponding Affymetrix probe sets: 1423628_s_at (Mouse Genome 430 2.0 Array)   1438103_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000141244
Ensembl peptide - ENSMUSP00000068846
NCBI entrez gene - 93707     See in Manteia.
MGI - MGI:1935203
RefSeq - NM_033582
RefSeq Peptide - NP_291060
swissprot - A0A0A6YVS5
swissprot - Q91XX0
Ensembl - ENSMUSG00000023036
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1g26ENSDARG00000099931Danio rerio
 pcdh1g29ENSDARG00000104497Danio rerio
 pcdh1g33ENSDARG00000099035Danio rerio
 pcdh1gc5ENSDARG00000104826Danio rerio
 pcdh1gc6ENSDARG00000103950Danio rerio
 Q9Y5F7ENSG00000242419Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhgc5 / protocadherin gamma subfamily C, 5 / Q9Y5F6*ENSMUSG0000010254353
Pcdhga1 / protocadherin gamma subfamily A, 1 / Q9Y5H4*ENSMUSG0000010314446
Pcdhga2 / protocadherin gamma subfamily A, 2ENSMUSG0000010333246
Pcdhgb7 / protocadherin gamma subfamily B, 7 / Q9Y5F8*ENSMUSG0000010406346
Pcdhgb1 / protocadherin gamma subfamily B, 1 / Q9Y5G3*ENSMUSG0000010303745
Pcdhga12ENSMUSG0000010242845
Pcdhgb8 / protocadherin gamma subfamily B, 8ENSMUSG0000010308145
Pcdhgb5 / protocadherin gamma subfamily B, 5 / Q9Y5G0*ENSMUSG0000010374944
Pcdhgb6 / protocadherin gamma subfamily B, 6 / Q9Y5F9*ENSMUSG0000010308844
Pcdhgb2 / protocadherin gamma subfamily B, 2 / Q9Y5G2*ENSMUSG0000010274844
Pcdhgb4 / protocadherin gamma subfamily B, 4 / Q9UN71*ENSMUSG0000010358543
O88689 / Gm42416 / predicted gene, 42416ENSMUSG0000010345843
Pcdhb13 / protocadherin beta 13 / PCDHB6* / Q9Y5E3* / protocadherin beta 6*ENSMUSG0000004730734
Pcdhb20 / protocadherin beta 20 / Q9Y5E9* / PCDHB14* / protocadherin beta 14*ENSMUSG0000004619133
Pcdhb17 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004638733
Pcdhb7 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000004506232
Pcdhb19 / protocadherin beta 19 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004331332
Q6PB90 / Pcdhb14 / Protocadherin beta-14 ENSMUSG0000004404332
Pcdhb2 / protocadherin beta 2 / Q9Y5E7*ENSMUSG0000005159932
Pcdhb9 / protocadherin beta 9 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000005124232


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030728  Protocadherin gamma-C3
 IPR031904  Cadherin, C-terminal catenin-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0050808 synapse organization IGI
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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