ENSMUSG00000053552


Mus musculus

Features
Gene ID: ENSMUSG00000053552
  
Biological name :Ebf4
  
Synonyms : early B cell factor 4 / Ebf4 / Q8K4J2
  
Possible biological names infered from orthology : Q9BQW3
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: F1
Gene start: 130295169
Gene end: 130370481
  
Corresponding Affymetrix probe sets: 10476108 (MoGene1.0st)   1435044_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000134520
Ensembl peptide - ENSMUSP00000105916
Ensembl peptide - ENSMUSP00000105917
Ensembl peptide - ENSMUSP00000133528
Ensembl peptide - ENSMUSP00000105915
NCBI entrez gene - 228598     See in Manteia.
MGI - MGI:2385972
RefSeq - XM_011239472
RefSeq - XM_006499280
RefSeq - XM_006499282
RefSeq - XM_006499285
RefSeq - XM_011239470
RefSeq - XM_011239471
RefSeq - NM_001110513
RefSeq - XM_006499279
RefSeq Peptide - NP_001103983
swissprot - B2RQX3
swissprot - A2BI84
swissprot - A2BI80
swissprot - Q8K4J2
Ensembl - ENSMUSG00000053552
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EBF4ENSG00000088881Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Ebf3 / O08791 / early B cell factor 3 / Q9H4W6*ENSMUSG0000001047672
Ebf1 / Q07802 / early B cell factor 1 / Q9UH73*ENSMUSG0000005709870
Ebf2 / O08792 / early B cell factor 2 / Q9HAK2*ENSMUSG0000002205367


Protein motifs (from Interpro)
Interpro ID Name
 IPR002909  IPT domain
 IPR003523  Transcription factor COE
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR018350  Transcription factor COE, conserved site
 IPR032200  Transcription factor COE, DNA-binding domain
 IPR032201  Transcription factor COE, helix-loop-helix domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IMP
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IMP
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008134 transcription factor binding IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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