ENSMUSG00000056025


Mus musculus

Features
Gene ID: ENSMUSG00000056025
  
Biological name :Clca3a1
  
Synonyms : Calcium-activated chloride channel regulator 3A-1 / Clca3a1 / Q9QX15
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: H2
Gene start: 144729677
Gene end: 144760977
  
Corresponding Affymetrix probe sets: 10502552 (MoGene1.0st)   1417852_x_at (Mouse Genome 430 2.0 Array)   1417853_at (Mouse Genome 430 2.0 Array)   1460259_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000029932
Ensembl peptide - ENSMUSP00000054526
NCBI entrez gene - 12722     See in Manteia.
MGI - MGI:1316732
RefSeq - XM_011240004
RefSeq - NM_009899
RefSeq - XM_006500965
RefSeq - XM_006500967
RefSeq - XM_006500968
RefSeq Peptide - NP_034029
swissprot - Q91Z28
swissprot - Q9QX15
Ensembl - ENSMUSG00000056025
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 clca1ENSDARG00000016290Danio rerio
 clca1ENSDARG00000100941Danio rerio
 clca5.1ENSDARG00000099606Danio rerio
 si:ch211-116o3.3ENSDARG00000086498Danio rerio
 ENSGALG00000006322Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Clca3a2 / chloride channel accessory 3A2ENSMUSG0000002826295
Clca3b / chloride channel accessory 3BENSMUSG0000003703381
Clca1 / Q9D7Z6 / Calcium-activated chloride channel regulator 1 / A8K7I4* / chloride channel accessory 1*ENSMUSG0000002825549
Clca4a / CLCA4* / Q14CN2* / chloride channel accessory 4*ENSMUSG0000006854748
Clca4b / chloride channel accessory 4B / CLCA4* / Q14CN2* / chloride channel accessory 4*ENSMUSG0000007419548
Clca2 / Q8BG22 / Calcium-activated chloride channel regulator 2 / Q9UQC9* / chloride channel accessory 2*ENSMUSG0000003696046


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR004727  Calcium-activated chloride channel protein, chordata
 IPR013642  Calcium-activated chloride channel, N-terminal
 IPR013783  Immunoglobulin-like fold
 IPR024079  Metallopeptidase, catalytic domain superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006821 chloride transport IDA
 biological_processGO:0034220 ion transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005229 intracellular calcium activated chloride channel activity IDA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr