ENSMUSG00000058254


Mus musculus

Features
Gene ID: ENSMUSG00000058254
  
Biological name :Tspan7
  
Synonyms : Q62283 / tetraspanin 7 / Tspan7
  
Possible biological names infered from orthology : AF241726.2 / P41732
  
Species: Mus musculus
  
Chr. number: X
Strand: 1
Band: A1.1
Gene start: 10485158
Gene end: 10596605
  
Corresponding Affymetrix probe sets: 10598626 (MoGene1.0st)   1417502_at (Mouse Genome 430 2.0 Array)   1448737_at (Mouse Genome 430 2.0 Array)   1459812_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000075692
Ensembl peptide - ENSMUSP00000111188
NCBI entrez gene - 21912     See in Manteia.
MGI - MGI:1298407
RefSeq - XM_006527583
RefSeq - NM_019634
RefSeq Peptide - NP_062608
swissprot - Q3UHG5
swissprot - Q62283
Ensembl - ENSMUSG00000058254
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tspan7bENSDARG00000008407Danio rerio
 ENSGALG00000016251Gallus gallus
 AF241726.2ENSG00000250349Homo sapiens
 P41732ENSG00000156298Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tspan6 / tetraspanin 6 / O43657*ENSMUSG0000006737758
Q9QY33 / Tspan3 / tetraspanin 3 / O60637*ENSMUSG0000003232430
Cd151 / O35566 / CD151 antigen / P48509* / CD151 molecule (Raph blood group)*ENSMUSG0000002551030
Tspan17 / tetraspanin 17 / Q96FV3*ENSMUSG0000002587530
Cd63 / P41731 / CD63 antigen / P08962* / CD63 molecule*ENSMUSG0000002535128
Q8R3S2 / Tspan33 / Tetraspanin-33 / Q86UF1*ENSMUSG0000000176328
P62080 / Tspan5 / tetraspanin 5 / P62079*ENSMUSG0000002815227
Q9D1D1 / Tspan11 / Tetraspanin-11 / A1L157*ENSMUSG0000003035127
Tspan10 / tetraspanin 10ENSMUSG0000003969127
F7BWT7 / Tspan15 / Tetraspanin-15 / O95858*ENSMUSG0000003703126
Q8QZY6 / Tspan14 / Tetraspanin-14 / Q8NG11*ENSMUSG0000003782426


Protein motifs (from Interpro)
Interpro ID Name
 IPR000301  Tetraspanin
 IPR008952  Tetraspanin, EC2 domain superfamily
 IPR018499  Tetraspanin/Peripherin
 IPR018503  Tetraspanin, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IBA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Trafficking of GluR2-containing AMPA receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001473 reduced long term potentiation "less than the normal persistent robust synaptic response induced by synchronous stimulation of pre- and postsynaptic cells " [Principles of Neural Science:ISBN 0-8385-8034-3]
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0003461 abnormal response to novel object "altered investigative behavior from controls in reactions associated with exposing an animal to a novel object" [CFG:Center for Functional Genomics, Northwestern University]
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0004753 abnormal miniature excitatory postsynaptic currents "defect in the size or duration of spontaneous currents detected in postsynaptic cells that occur in the absence of an excitatory impulse" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0005402 abnormal action potential "change in the electric response of a nerve or other excitable tissue to its stimulation" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0008428 abnormal spatial working memory "anomaly in the ability to spontaneously process spatial location information in order to naviagate or perform other behavior using such locational cues, without previous encounters or training at that location" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0009454 impaired contextual conditioning "decrease in the ability of an animal to learn and remember an association between an aversive experience (the unconditioned stimulus (US), usually a shock) and the neutral, unchanging environment (the conditioned stimulus (CS), or the environmental context in this case)" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0009939 abnormal hippocampus neuron morphology 
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0012307 impaired spatial learning "impaired ability to ascertain or acquire spatial location information in order to improve navigation or other behavior using such location cues" [MGI:csmith]
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

 MP:0020508 decreased dendritic spine density "decrease in the number of dendritic spines in a given cross-sectional area of a dendrite" [MGI:smb]
Show

Allelic Composition: Lifrtm1Imx/Lifr+
Genetic Background: B6;129S7-Lifrtm1Imx/J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000068206 Pick1 / protein interacting with C kinase 1 / Q9NRD5* / protein interacting with PRKCA 1*  / complex






 

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