ENSMUSG00000060988


Mus musculus

Features
Gene ID: ENSMUSG00000060988
  
Biological name :Galnt13
  
Synonyms : Galnt13 / Polypeptide N-acetylgalactosaminyltransferase 13 / Q8CF93
  
Possible biological names infered from orthology : Q8IUC8
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: C1.1
Gene start: 54436317
Gene end: 55118309
  
Corresponding Affymetrix probe sets: 10472136 (MoGene1.0st)   1439899_at (Mouse Genome 430 2.0 Array)   1457045_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000063464
Ensembl peptide - ENSMUSP00000108254
Ensembl peptide - ENSMUSP00000108255
Ensembl peptide - ENSMUSP00000115879
Ensembl peptide - ENSMUSP00000108253
NCBI entrez gene - 271786     See in Manteia.
MGI - MGI:2139447
RefSeq - XM_006498092
RefSeq - XM_006498088
RefSeq - XM_006498089
RefSeq - XM_006498090
RefSeq - XM_006498091
RefSeq - NM_173030
RefSeq - XM_006498087
RefSeq Peptide - NP_766618
swissprot - B1AY79
swissprot - A2RRI8
swissprot - Q8CF93
Ensembl - ENSMUSG00000060988
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 galnt13ENSDARG00000099227Danio rerio
 GALNT13ENSGALG00000012536Gallus gallus
 Q8IUC8ENSG00000144278Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Galnt1 / O08912 / Polypeptide N-acetylgalactosaminyltransferase 1 Polypeptide N-acetylgalactosaminyltransferase 1 soluble form / Q10472* / polypeptide N-acetylgalactosaminyltransferase 1*ENSMUSG0000000042084
Galnt6 / Q8C7U7 / Polypeptide N-acetylgalactosaminyltransferase 6 / Q8NCL4*ENSMUSG0000003728044
Galnt3 / P70419 / Polypeptide N-acetylgalactosaminyltransferase 3 / Q14435*ENSMUSG0000002699444
Galnt4 / O08832 / Polypeptide N-acetylgalactosaminyltransferase 4 / Q8N4A0* / POC1B-GALNT4* / POC1B-GALNT4 readthrough*ENSMUSG0000009003543
Q8BGT9 / Galnt12 / Polypeptide N-acetylgalactosaminyltransferase 12 / Q8IXK2*ENSMUSG0000003977442
Galnt2 / Q6PB93 / Polypeptide N-acetylgalactosaminyltransferase 2 Polypeptide N-acetylgalactosaminyltransferase 2 soluble form / Q10471* / polypeptide N-acetylgalactosaminyltransferase 2*ENSMUSG0000008970441
Q921L8 / Galnt11 / Polypeptide N-acetylgalactosaminyltransferase 11 / Q8NCW6*ENSMUSG0000003807241
Q8BVG5 / Galnt14 / Polypeptide N-acetylgalactosaminyltransferase 14 / Q96FL9*ENSMUSG0000002406439
Q6PB93 / Gm20388 / predicted gene 20388 / GALNT2* / Q10471* / polypeptide N-acetylgalactosaminyltransferase 2*ENSMUSG0000009232939
Q9JJ61 / Galnt16 / Polypeptide N-acetylgalactosaminyltransferase 16 / Q8N428*ENSMUSG0000002113038
Galnt5 / Q8C102 / Polypeptide N-acetylgalactosaminyltransferase 5 / Q7Z7M9*ENSMUSG0000002682835
Q9D4M9 / Galntl5 / Inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 / Q7Z4T8* / polypeptide N-acetylgalactosaminyltransferase like 5*ENSMUSG0000002893829


Protein motifs (from Interpro)
Interpro ID Name
 IPR000772  Ricin B, lectin domain
 IPR001173  Glycosyltransferase 2-like
 IPR029044  Nucleotide-diphospho-sugar transferases
 IPR035992  Ricin B-like lectins


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006493 protein O-linked glycosylation IDA
 biological_processGO:0018242 protein O-linked glycosylation via serine ISO
 biological_processGO:0018243 protein O-linked glycosylation via threonine ISO
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004653 polypeptide N-acetylgalactosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
O-linked glycosylation of mucins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Apaf1tm1Mak/Apaf1tm1Mak,Rb1tm1Tyj/Rb1tm1Tyj,Tg(Rb1)1Blg/0
Genetic Background: involves: 129P2/OlaHsd * 129S2/SvPas * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr