ENSDARG00000011259


Danio rerio

Features
Gene ID: ENSDARG00000011259
  
Biological name :trpm1a
  
Synonyms : transient receptor potential cation channel, subfamily M, member 1a / trpm1a
  
Possible biological names infered from orthology : Q2TV84 / Q7Z4N2 / transient receptor potential cation channel subfamily M member 1 / TRPM1
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 29312376
Gene end: 29341364
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000052583
Ensembl peptide - ENSDARP00000122928
Ensembl peptide - ENSDARP00000119856
Ensembl peptide - ENSDARP00000081099
NCBI entrez gene - 791196     See in Manteia.
RefSeq - XM_017356917
RefSeq - XM_017356919
RefSeq - NM_001080678
RefSeq Peptide - NP_001074147
RefSeq Peptide - NP_001303302
swissprot - E9QJ88
swissprot - E9QDA0
swissprot - E7FDL5
swissprot - F1R432
ZFIN ID - ZDB-GENE-070112-1372
Ensembl - ENSDARG00000011259
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPM1ENSGALG00000003849Gallus gallus
 TRPM1ENSG00000134160Homo sapiens
 Trpm1ENSMUSG00000030523Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpm1b / transient receptor potential cation channel, subfamily M, member 1b / TRPM1* / Q7Z4N2* / transient receptor potential cation channel subfamily M member 1*ENSDARG0000010347671
trpm3 / transient receptor potential cation channel, subfamily M, member 3 / Q9HCF6*ENSDARG0000003918159
trpm7 / transient receptor potential cation channel, subfamily M, member 7 / Q923J1* / Q96QT4*ENSDARG0000003623237
trpm6 / transient receptor potential cation channel, subfamily M, member 6 / Q9BX84*ENSDARG0000010345434
trpm2 / transient receptor potential cation channel, subfamily M, member 2 / O94759* / Q91YD4*ENSDARG0000010164124
trpm4a / transient receptor potential cation channel, subfamily M, member 4a / TRPM4* / Q7TN37* / Q8TD43* / transient receptor potential cation channel subfamily M member 4*ENSDARG0000005999322
trpm5 / transient receptor potential cation channel, subfamily M, member 5 / Q9JJH7* / Q9NZQ8*ENSDARG0000005979221
si:ch211-173d10.1 / TRPM4* / Q7TN37* / Q8TD43* / transient receptor potential cation channel subfamily M member 4*ENSDARG0000006334721
trpm4b.2 / transient receptor potential cation channel, subfamily M, member 4b, transient receptor potential cation channel, subfamily M, member 4b, tandem duplicate 2 / TRPM4* / Q8TD43* / ...ENSDARG0000006343520
si:ch211-173d10.1 / TRPM4* / Q8TD43* / transient receptor potential cation channel subfamily M member 4*ENSDARG000001094429


Protein motifs (from Interpro)
Interpro ID Name
 IPR005821  Ion transport domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR020683  Ankyrin repeat-containing domain
 IPR032415  TRPM, tetramerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0051262 protein tetramerization IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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