ENSDARG00000103476


Danio rerio
transporttrpm1bioncationchanneltransmembranedomainreceptormembraneactivitytransientpotentialsubfamilymmembertrpmtetramerisationg-proteincoupledglutamatesignalingpathwayproteintetramerizationcellularresponselightstimulusintegralcomponenttrp

Features
Gene ID: ENSDARG00000103476
  
Biological name :trpm1b
  
Synonyms : transient receptor potential cation channel, subfamily M, member 1b / trpm1b
  
Possible biological names infered from orthology : Q2TV84 / Q7Z4N2 / transient receptor potential cation channel subfamily M member 1 / TRPM1
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 34576067
Gene end: 34615463
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000135392
Ensembl peptide - ENSDARP00000133282
NCBI entrez gene - 569946     See in Manteia.
RefSeq - NM_001110479
RefSeq Peptide - NP_001103949
swissprot - A3KNP8
swissprot - S5UFP7
ZFIN ID - ZDB-GENE-070424-31
Ensembl - ENSDARG00000103476
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRPM1ENSGALG00000003849Gallus gallus
 TRPM1ENSG00000134160Homo sapiens
 Trpm1ENSMUSG00000030523Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trpm1a / transient receptor potential cation channel, subfamily M, member 1a / TRPM1* / Q2TV84* / Q7Z4N2* / transient receptor potential cation channel subfamily M member 1*ENSDARG0000001125969
trpm3 / transient receptor potential cation channel, subfamily M, member 3 / Q9HCF6*ENSDARG0000003918155
trpm7 / transient receptor potential cation channel, subfamily M, member 7 / Q923J1* / Q96QT4*ENSDARG0000003623237
trpm6 / transient receptor potential cation channel, subfamily M, member 6 / Q9BX84*ENSDARG0000010345433
trpm2 / transient receptor potential cation channel, subfamily M, member 2 / O94759* / Q91YD4*ENSDARG0000010164122
trpm4a / transient receptor potential cation channel, subfamily M, member 4a / TRPM4* / Q7TN37* / Q8TD43* / transient receptor potential cation channel subfamily M member 4*ENSDARG0000005999321
trpm5 / transient receptor potential cation channel, subfamily M, member 5 / Q9JJH7* / Q9NZQ8*ENSDARG0000005979220
si:ch211-173d10.1 / TRPM4* / Q7TN37* / Q8TD43* / transient receptor potential cation channel subfamily M member 4*ENSDARG0000006334719
trpm4b.2 / transient receptor potential cation channel, subfamily M, member 4b, transient receptor potential cation channel, subfamily M, member 4b, tandem duplicate 2 / TRPM4* / Q8TD43* / ...ENSDARG0000006343519
si:ch211-173d10.1 / TRPM4* / Q8TD43* / transient receptor potential cation channel subfamily M member 4*ENSDARG000001094428


Protein motifs (from Interpro)
Interpro ID Name
 IPR005821  Ion transport domain
 IPR029588  Transient receptor potential cation channel subfamily M member 1
 IPR032415  TRPM, tetramerisation domain


Gene Ontology (GO)
establishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localizationcell communicationcellular response to stimuluscellular component organizationcellular component biogenesisresponse to abiotic stimulusestablishment of localiestablishment of localizationcell communicationcell communicationcellular response to stcellular response to stimuluscellular component orgacellular component organizationcellular component biogcellular component biogenesisresponse to abiotic stiresponse to abiotic stimulus
transmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activitytransmembrane transporter activity
membranemembranemembranemembranemembranemembranemembranemembranemembranemembranemembranemembrane
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007216 G-protein coupled glutamate receptor signaling pathway IEA
 biological_processGO:0034220 ion transmembrane transport IEA
 biological_processGO:0051262 protein tetramerization IEA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0071482 cellular response to light stimulus IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005216 ion channel activity IEA
 molecular_functionGO:0005261 cation channel activity IEA


Pathways (from Reactome)
Pathway description
TRP channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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