ENSDARG00000013892


Danio rerio

Features
Gene ID: ENSDARG00000013892
  
Biological name :sorl1
  
Synonyms : sorl1 / sortilin-related receptor, L(DLR class) A repeats containing
  
Possible biological names infered from orthology : O88307 / Q92673 / Sortilin-related receptor / sortilin related receptor 1
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 21541010
Gene end: 21669618
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000129655
NCBI entrez gene - 497306     See in Manteia.
RefSeq - XM_005157550
RefSeq - XM_005157551
swissprot - X1WHE3
ZFIN ID - ZDB-GENE-050208-22
Ensembl - ENSDARG00000013892
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SORL1ENSGALG00000006598Gallus gallus
 SORL1ENSG00000137642Homo sapiens
 Sorl1ENSMUSG00000049313Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sorcs3b / sortilin related VPS10 domain containing receptor 3b / Q9UPU3* / SORCS3* / Q8VI51* / VPS10 domain-containing receptor SorCS3 * / sortilin related VPS10 domain containing receptor 3*ENSDARG0000007734912
sorcs2 / sortilin-related VPS10 domain containing receptor 2 / Q96PQ0* / Q9EPR5*ENSDARG0000007746512
SORCS3 / sortilin related VPS10 domain containing receptor 3 / Q9UPU3*ENSDARG0000010353511
sort1a / sortilin 1a / SORT1* / Q99523* / Q6PHU5* / Sortilin * / sortilin 1*ENSDARG000000294029
sort1b / sortilin 1b / SORT1* / Q99523* / Q6PHU5* / Sortilin * / sortilin 1*ENSDARG000000562528
si:dkey-159a18.1ENSDARG000000561455
LO017711.1 / Q8WY21* / SORCS1* / sortilin related VPS10 domain containing receptor 1*ENSDARG000001120344


Protein motifs (from Interpro)
Interpro ID Name
 IPR000033  LDLR class B repeat
 IPR002172  Low-density lipoprotein (LDL) receptor class A repeat
 IPR003961  Fibronectin type III
 IPR006581  VPS10
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013783  Immunoglobulin-like fold
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR023415  Low-density lipoprotein (LDL) receptor class A, conserved site
 IPR031777  Sortilin, C-terminal
 IPR031778  Sortilin, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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