ENSDARG00000056252


Danio rerio

Features
Gene ID: ENSDARG00000056252
  
Biological name :sort1b
  
Synonyms : sort1b / sortilin 1b
  
Possible biological names infered from orthology : Q6PHU5 / Q99523 / SORT1 / Sortilin / sortilin 1
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 25041713
Gene end: 25074319
  
Corresponding Affymetrix probe sets: Dr.7387.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000119088
NCBI entrez gene - 799153     See in Manteia.
RefSeq - NM_001126465
RefSeq Peptide - NP_001119937
swissprot - A5PMG8
ZFIN ID - ZDB-GENE-030131-7447
Ensembl - ENSDARG00000056252
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SORT1ENSGALG00000033572Gallus gallus
 SORT1ENSG00000134243Homo sapiens
 Sort1ENSMUSG00000068747Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sort1a / sortilin 1a / SORT1* / Q99523* / Q6PHU5* / Sortilin * / sortilin 1*ENSDARG0000002940265
si:dkey-159a18.1ENSDARG0000005614525
sorl1 / sortilin-related receptor, L(DLR class) A repeats containing / Q92673* / O88307* / Sortilin-related receptor * / sortilin related receptor 1*ENSDARG0000001389222
sorcs2 / sortilin-related VPS10 domain containing receptor 2 / Q96PQ0* / Q9EPR5*ENSDARG0000007746522
sorcs3b / sortilin related VPS10 domain containing receptor 3b / Q9UPU3* / SORCS3* / Q8VI51* / VPS10 domain-containing receptor SorCS3 * / sortilin related VPS10 domain containing receptor 3*ENSDARG0000007734921
SORCS3 / sortilin related VPS10 domain containing receptor 3 / Q9UPU3*ENSDARG0000010353518
LO017711.1 / Q8WY21* / SORCS1* / sortilin related VPS10 domain containing receptor 1*ENSDARG000001120344


Protein motifs (from Interpro)
Interpro ID Name
 IPR006581  VPS10
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR031777  Sortilin, C-terminal
 IPR031778  Sortilin, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0071466 cellular response to xenobiotic stimulus IDA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Golgi Associated Vesicle Biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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