ENSDARG00000018069


Danio rerio

Features
Gene ID: ENSDARG00000018069
  
Biological name :rdh12
  
Synonyms : rdh12 / retinol dehydrogenase 12 (all-trans/9-cis/11-cis)
  
Possible biological names infered from orthology : Q8BYK4 / Q8TC12 / Q96NR8 / Q9QYF1 / RDH11 / Retinol dehydrogenase 11 / retinol dehydrogenase 11 (all-trans/9-cis/11-cis) / Retinol dehydrogenase 12
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 33055548
Gene end: 33065830
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000121735
NCBI entrez gene - 436597     See in Manteia.
RefSeq - NM_001002325
RefSeq Peptide - NP_001002325
swissprot - B8A539
ZFIN ID - ZDB-GENE-040718-9
Ensembl - ENSDARG00000018069
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000009538Gallus gallus
 RDH11ENSG00000072042Homo sapiens
 RDH12ENSG00000139988Homo sapiens
 Rdh11ENSMUSG00000066441Mus musculus
 Rdh12ENSMUSG00000021123Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rdh12l / retinol dehydrogenase 12, likeENSDARG0000004527752
zgc:112332ENSDARG0000005896652
si:ch211-107o10.3 / RDH13* / Q8CEE7* / Q8NBN7* / retinol dehydrogenase 13*ENSDARG0000000849151
si:dkey-94e7.2ENSDARG0000006847451
zgc:153441 / RDH13* / Q8CEE7* / Q8NBN7* / retinol dehydrogenase 13*ENSDARG0000005479750
si:dkey-23o4.6 / RDH13* / Q8CEE7* / Q8NBN7* / retinol dehydrogenase 13*ENSDARG0000003457749
si:dkey-73n8.3ENSDARG0000008920549
dhrs13b / dehydrogenase/reductase (SDR family) member 13b / Q6UX07* / DHRS13* / Q5SS80* / dehydrogenase/reductase 13* / Dehydrogenase/reductase SDR family member 13 *ENSDARG0000003181446
dhrs13a.3 / dehydrogenase/reductase (SDR family) member 13a, duplicate 3 / Q6UX07* / DHRS13* / Q5SS80* / dehydrogenase/reductase 13* / Dehydrogenase/reductase SDR family member 13 *ENSDARG0000004113746
dhrs13a.1 / dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 1 / Q6UX07* / DHRS13* / Q5SS80* / dehydrogenase/reductase 13* / Dehydrogenase/reductase SDR family member 13 *ENSDARG0000002632245
rdh14b / retinol dehydrogenase 14b / RDH14* / Q9HBH5* / Q9ERI6* / retinol dehydrogenase 14*ENSDARG0000000246744
rdh14a / retinol dehydrogenase 14a / RDH14* / Q9HBH5* / Q9ERI6* / retinol dehydrogenase 14*ENSDARG0000003929944
dhrs13l1 / dehydrogenase/reductase (SDR family) member 13 like 1 / Q6UX07* / DHRS13* / Q5SS80* / dehydrogenase/reductase 13* / Dehydrogenase/reductase SDR family member 13 *ENSDARG0000009874643
zgc:64106ENSDARG0000001137142
si:dkey-174n20.1ENSDARG0000003557942
dhrs13a.2 / dehydrogenase/reductase (SDR family) member 13a, tandem duplicate 2 / DHRS13* / Q6UX07* / dehydrogenase/reductase 13*ENSDARG0000011124042
dhrsx / dehydrogenase/reductase (SDR family) X-linked / Q8N5I4* / dehydrogenase/reductase X-linked*ENSDARG0000007928035
wwox / WW domain containing oxidoreductase / Q91WL8* / Q9NZC7*ENSDARG0000000761432
dhrs12 / dehydrogenase/reductase (SDR family) member 12 / A0PJE2* / dehydrogenase/reductase 12*ENSDARG0000001177028
si:ch211-165b10.3ENSDARG0000007697027


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR016040  NAD(P)-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055114 oxidation-reduction process IEA
 molecular_functionGO:0016491 oxidoreductase activity IBA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
RA biosynthesis pathway
Retinoid metabolism and transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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