ENSDARG00000020497


Danio rerio

Features
Gene ID: ENSDARG00000020497
  
Biological name :rab7
  
Synonyms : rab7 / RAB7, member RAS oncogene family
  
Possible biological names infered from orthology : P51149 / P51150 / RAB7A / RAB7A, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 16176603
Gene end: 16215470
  
Corresponding Affymetrix probe sets: Dr.12260.1.A1_at (Zebrafish Array)   NM_200928_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000022120
Ensembl peptide - ENSDARP00000155139
NCBI entrez gene - 393902     See in Manteia.
RefSeq - NM_200928
RefSeq Peptide - NP_957222
swissprot - Q7T2C6
ZFIN ID - ZDB-GENE-040426-1352
Ensembl - ENSDARG00000020497
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB7AENSGALG00000005902Gallus gallus
 RAB7AENSG00000075785Homo sapiens
 Rab7ENSMUSG00000079477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:100918ENSDARG0000008724391
zgc:91909ENSDARG0000002128788
si:dkey-13a21.4ENSDARG0000002609851
rab9a / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*ENSDARG0000004502750
rab9b / RAB9B, member RAS oncogene family / Q8BHH2* / Q9NP90*ENSDARG0000010339149
rab32a / RAB32a, member RAS oncogene family / RAB32* / Q9CZE3* / Q13637* / RAB32, member RAS oncogene family*ENSDARG0000002903635
rab38c / RAB38c, member of RAS oncogene familyENSDARG0000007471933
rab23 / RAB23, member RAS oncogene family / Q9ULC3*ENSDARG0000000415131
rab32b / RAB32b, member RAS oncogene familyENSDARG0000004116531
zgc:162171ENSDARG0000003649930
rab38b / RAB38b, member of RAS oncogene family / RAB38* / P57729* / RAB38, member RAS oncogene family*ENSDARG0000011288930


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016197 endosomal transport IDA
 cellular_componentGO:0005770 late endosome IDA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation
TBC/RABGAPs
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020497 rab7 / RAB7, member RAS oncogene family / RAB7A* / P51150* / P51149* / RAB7A, member RAS oncogene family*  / complex
 ENSDARG00000074660 rilp / Rab interacting lysosomal protein / Q5ND29* / Q96NA2*  / complex
 ENSDARG00000056122 gdi1 / GDP dissociation inhibitor 1 / P31150* / P50396* / Rab GDP dissociation inhibitor alpha *  / complex
 ENSDARG00000056559 ccz1 / CCZ1 homolog, vacuolar protein trafficking and biogenesis associated / CCZ1B* / P86790* / P86791* / Q8C1Y8* / Vacuolar fusion * / CCZ1 homolog B, vacuolar protein trafficking and bi...  / reaction
 ENSDARG00000078585 mon1a / MON1 secretory trafficking family member A / Q86VX9* / MON1 homolog A, secretory trafficking associated*  / reaction
 ENSDARG00000105147 osbpl1a / oxysterol binding protein-like 1A / Q91XL9* / Q9BXW6* / Oxysterol-binding protein-related protein 1 *  / complex






 

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