ENSDARG00000045027


Danio rerio

Features
Gene ID: ENSDARG00000045027
  
Biological name :rab9a
  
Synonyms : rab9a / RAB9A, member RAS oncogene family
  
Possible biological names infered from orthology : P51151 / Q9R0M6 / Rab9 / RAB9, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 54686686
Gene end: 54704498
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000066197
Ensembl peptide - ENSDARP00000153421
NCBI entrez gene - 751756     See in Manteia.
RefSeq - NM_001242974
RefSeq - NM_001045466
RefSeq Peptide - NP_001038931
RefSeq Peptide - NP_001229903
swissprot - Q0P458
ZFIN ID - ZDB-GENE-060825-293
Ensembl - ENSDARG00000045027
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB9AENSGALG00000016579Gallus gallus
 RAB9AENSG00000123595Homo sapiens
 Rab9ENSMUSG00000079316Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab9b / RAB9B, member RAS oncogene family / Q8BHH2* / Q9NP90*ENSDARG0000010339170
rab7 / RAB7, member RAS oncogene family / RAB7A* / P51150* / P51149* / RAB7A, member RAS oncogene family*ENSDARG0000002049751
zgc:91909ENSDARG0000002128751
zgc:100918ENSDARG0000008724350
si:dkey-13a21.4ENSDARG0000002609846
rab38c / RAB38c, member of RAS oncogene familyENSDARG0000007471935
rab32b / RAB32b, member RAS oncogene familyENSDARG0000004116533
rab23 / RAB23, member RAS oncogene family / Q9ULC3*ENSDARG0000000415132
rab32a / RAB32a, member RAS oncogene family / RAB32* / Q9CZE3* / Q13637* / RAB32, member RAS oncogene family*ENSDARG0000002903632
zgc:162171ENSDARG0000003649931
rab38b / RAB38b, member of RAS oncogene family / RAB38* / P57729* / RAB38, member RAS oncogene family*ENSDARG0000011288930


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000018432 m6pr / mannose-6-phosphate receptor (cation dependent) / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / complex
 ENSDARG00000069324 vps53 / vacuolar protein sorting 53 homolog (S. cerevisiae) / Q5VIR6* / Q8CCB4* / VPS53, GARP complex subunit*  / reaction
 ENSDARG00000056122 gdi1 / GDP dissociation inhibitor 1 / P31150* / P50396* / Rab GDP dissociation inhibitor alpha *  / complex
 ENSDARG00000099258 vps52 / vacuolar protein sorting 52 homolog (S. cerevisiae) / Q8C754* / Q8N1B4* / VPS52, GARP complex subunit*  / reaction
 ENSDARG00000006094 igf2r / insulin-like growth factor 2 receptor / P11717* / Q07113* / Cation-independent mannose-6-phosphate receptor *  / complex
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / reaction
 ENSDARG00000075030 stx10 / syntaxin 10 / O60499*  / reaction
 ENSDARG00000070161 vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*  / complex
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / reaction
 ENSDARG00000112165 Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr