ENSDARG00000038990


Danio rerio

Features
Gene ID: ENSDARG00000038990
  
Biological name :wnt3
  
Synonyms : wingless-type MMTV integration site family, member 3 / wnt3
  
Possible biological names infered from orthology : P17553 / P56703 / Wnt family member 3
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 22258962
Gene end: 22304841
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000105032
NCBI entrez gene - 569420     See in Manteia.
RefSeq - NM_001114552
RefSeq Peptide - NP_001108024
swissprot - B0LK22
ZFIN ID - ZDB-GENE-081003-1
Ensembl - ENSDARG00000038990
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 WNT3ENSGALG00000001079Gallus gallus
 WNT3ENSG00000108379Homo sapiens
 Wnt3ENSMUSG00000000125Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
wnt3a / wingless-type MMTV integration site family, member 3A / P56704* / Wnt family member 3A*ENSDARG0000005882283
wnt7ba / wingless-type MMTV integration site family, member 7Ba / WNT7B* / P56706* / P28047* / Wnt family member 7B* / wingless-type MMTV integration site family, member 7B*ENSDARG0000002285844
wnt1 / P24257 / wingless-type MMTV integration site family, member 1 / P04628* / P04426* / Wnt family member 1*ENSDARG0000005555444
wnt7bb / wingless-type MMTV integration site family, member 7Bb / WNT7B* / P56706* / P28047* / Wnt family member 7B* / wingless-type MMTV integration site family, member 7B*ENSDARG0000007110744
wnt4a / P47793 / wingless-type MMTV integration site family, member 4a / WNT4* / P56705* / P22724* / Wnt family member 4* / wingless-type MMTV integration site family, member 4*ENSDARG0000007120843
wnt5b / Q92050 / wingless-type MMTV integration site family, member 5b / Q9H1J7* / P22726* / Wnt family member 5B*ENSDARG0000010246443
wnt5a / wingless-type MMTV integration site family, member 5a / P41221* / Wnt family member 5A*ENSDARG0000010497343
wnt7aa / wingless-type MMTV integration site family, member 7Aa / WNT7A* / P24383* / O00755* / Wnt family member 7A* / wingless-type MMTV integration site family, member 7A*ENSDARG0000004482742
wnt7ab / wingless-type MMTV integration site family, member 7Ab / WNT7A* / O00755* / Wnt family member 7A*ENSDARG0000000248341
wnt2ba / wingless-type MMTV integration site family, member 2Ba / WNT2B* / Q93097* / Wnt family member 2B*ENSDARG0000000505041
wnt2bb / wingless-type MMTV integration site family, member 2Bb / WNT2B* / Q93097* / O70283* / Wnt family member 2B* / wingless-type MMTV integration site family, member 2B*ENSDARG0000003223441
wnt4b / wingless-type MMTV integration site family, member 4bENSDARG0000004015941
wnt2 / Q92048 / wingless-type MMTV integration site family member 2 / P21552* / P09544* / Wnt family member 2*ENSDARG0000004111741
wnt6b / wingless-type MMTV integration site family, member 6b / WNT6* / Q9Y6F9* / P22727* / Wnt family member 6* / wingless-type MMTV integration site family, member 6*ENSDARG0000007393540
wnt16 / wingless-type MMTV integration site family, member 16 / Q9QYS1* / Q9UBV4* / Wnt family member 16*ENSDARG0000009497340
wnt11 / wingless-type MMTV integration site family, member 11ENSDARG0000000425635
wnt11r / wingless-type MMTV integration site family, member 11, related / WNT11* / P48615* / O96014* / Wnt family member 11* / wingless-type MMTV integration site family, member 11*ENSDARG0000001479635
wnt6a / wingless-type MMTV integration site family, member 6aENSDARG0000003828335


Protein motifs (from Interpro)
Interpro ID Name
 IPR005817  Wnt
 IPR009141  Wnt-3 protein
 IPR018161  Wnt protein, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0016055 Wnt signaling pathway IBA
 biological_processGO:0021794 thalamus development IGI
 biological_processGO:0030182 neuron differentiation IBA
 biological_processGO:0035844 cloaca development IMP
 biological_processGO:0045165 cell fate commitment IBA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IBA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005109 frizzled binding IBA


Pathways (from Reactome)
Pathway description
WNT ligand biogenesis and trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary cellular quality , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle decreased size , abnormal
Show

 ZFA:0000101 diencephalon diencephalon lacks all parts of type mid diencephalic organizer , abnormal
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 ZFA:0000151 pronephros pronephros distal region disorganized , abnormal
Show

 ZFA:0000330 cloacal chamber cloacal chamber distended , abnormal
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 ZFA:0000458 ventral thalamus ventral thalamus in contact with dorsal thalamus , abnormal
ventral thalamus decreased thickness , abnormal
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 ZFA:0000653 dorsal thalamus dorsal thalamus decreased thickness , abnormal
Show

 ZFA:0000706 posterior intestine posterior intestine distended , abnormal
Show

 ZFA:0001117 post-vent region post-vent region kinked , abnormal
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 ZFA:0005757 mid diencephalic organizer mid diencephalic organizer increased thickness , abnormal
mid diencephalic organizer decreased thickness , abnormal
mid diencephalic organizer cellular quality , abnormal
mid diencephalic organizer decreased size , abnormal
mid diencephalic organizer apoptotic , abnormal
Show

 ZFA:0005781 cloaca cloaca increased width , abnormal
cloaca cell disconnected , abnormal
cloaca epithelium disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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