ENSDARG00000040253


Danio rerio
domainonecutlrnapolymeraseiisuperfamilydna-templatedregulationdnabindinghomeoboxcuthomeobox-likelambdarepressor-likedna-bindingcelldifferentiationdevelopmentnucleustranscriptionalactivatoractivityproximalpromotersequence-specific

Features
Gene ID: ENSDARG00000040253
  
Biological name :onecutl
  
Synonyms : one cut domain, family member, like / onecutl
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 29521736
Gene end: 29528198
  
Corresponding Affymetrix probe sets: Dr.15425.1.S1_at (Zebrafish Array)   NM_152984_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124289
Ensembl peptide - ENSDARP00000143806
NCBI entrez gene - 246225     See in Manteia.
RefSeq - NM_152984
RefSeq Peptide - NP_694516
swissprot - B3DI70
swissprot - A2BF65
ZFIN ID - ZDB-GENE-020531-1
Ensembl - ENSDARG00000040253
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
onecut1 / one cut homeobox 1ENSDARG0000000798247
onecut3b / one cut homeobox 3b / O60422* / ONECUT3* / one cut homeobox 3*ENSDARG0000009105947
onecut3a / one cut homeobox 3a / Q8K557* / O60422* / ONECUT3* / one cut homeobox 3* / One cut domain family member 3 *ENSDARG0000005639546
onecut2 / one cut homeobox 2 / O95948* / Q6XBJ3* / One cut domain family member 2 *ENSDARG0000009038746
cux1a / cut-like homeobox 1aENSDARG0000007845922
cux2b / cut-like homeobox 2b / CUX2* / P70298* / O14529* / cut like homeobox 2* / Homeobox protein cut-like 2 *ENSDARG0000008634520
cux1b / cut-like homeobox 1bENSDARG000000431347


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily


Gene Ontology (GO)
nitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound metabolic processbiosynthetic processcellular metabolic processprimary metabolic processorganic substance metabolic processcellular developmental processanatomical structure developmentnitrogen compound menitrogen compound metabolic processbiosynthetic processbiosynthetic processcellular metabolic pcellular metabolic processprimary metabolic prprimary metabolic processorganic substance meorganic substance metabolic processcellular developmentcellular developmental processanatomical structureanatomical structure development
DNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityorganic cyclic compound bindingheterocyclic compound bindingDNA-binding transcription factor activityDNA-binding transcription factor activityorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048731 system development IBA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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