ENSDARG00000056395


Danio rerio

Features
Gene ID: ENSDARG00000056395
  
Biological name :onecut3a
  
Synonyms : onecut3a / one cut homeobox 3a
  
Possible biological names infered from orthology : O60422 / ONECUT3 / One cut domain family member 3 / one cut homeobox 3 / Q8K557
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 20461488
Gene end: 20473567
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000120476
swissprot - F1QBJ8
ZFIN ID - ZDB-GENE-050208-744
Ensembl - ENSDARG00000056395
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ONECUT3ENSGALG00000028081Gallus gallus
 O60422ENSG00000205922Homo sapiens
 Q8K557ENSMUSG00000045518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
onecut3b / one cut homeobox 3b / O60422* / ONECUT3* / one cut homeobox 3*ENSDARG0000009105983
onecut2 / one cut homeobox 2 / O95948* / Q6XBJ3* / One cut domain family member 2 *ENSDARG0000009038767
onecut1 / one cut homeobox 1ENSDARG0000000798263
onecutl / one cut domain, family member, likeENSDARG0000004025347
cux1a / cut-like homeobox 1aENSDARG0000007845926
cux2b / cut-like homeobox 2b / CUX2* / P70298* / O14529* / cut like homeobox 2* / Homeobox protein cut-like 2 *ENSDARG0000008634522
cux1b / cut-like homeobox 1bENSDARG000000431348


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001100 hepatic duct hepatic duct morphology , abnormal
hepatic duct decreased length , abnormal
hepatic duct disorganized , abnormal
hepatic duct decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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