ENSDARG00000043134


Danio rerio

Features
Gene ID: ENSDARG00000043134
  
Biological name :cux1b
  
Synonyms : cut-like homeobox 1b / cux1b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 2520319
Gene end: 2543834
  
Corresponding Affymetrix probe sets: Dr.12362.1.A1_at (Zebrafish Array)   NM_001003514_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123131
Ensembl peptide - ENSDARP00000063328
NCBI entrez gene - 445120     See in Manteia.
RefSeq - NM_001003514
RefSeq Peptide - NP_001003514
swissprot - F1RBV9
swissprot - F1QFI2
ZFIN ID - ZDB-GENE-040801-260
Ensembl - ENSDARG00000043134
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CUX1ENSGALG00000021636Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cux1a / cut-like homeobox 1aENSDARG0000007845947
cux2b / cut-like homeobox 2b / CUX2* / P70298* / O14529* / cut like homeobox 2* / Homeobox protein cut-like 2 *ENSDARG0000008634522
onecut1 / one cut homeobox 1ENSDARG000000079825
onecutl / one cut domain, family member, likeENSDARG000000402535
onecut3a / one cut homeobox 3a / Q8K557* / O60422* / ONECUT3* / one cut homeobox 3* / One cut domain family member 3 *ENSDARG000000563955
onecut2 / one cut homeobox 2 / O95948* / Q6XBJ3* / One cut domain family member 2 *ENSDARG000000903875
onecut3b / one cut homeobox 3b / O60422* / ONECUT3* / one cut homeobox 3*ENSDARG000000910595


Protein motifs (from Interpro)
Interpro ID Name
 IPR012955  CASP, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IEA
 biological_processGO:0007275 multicellular organism development IBA
 biological_processGO:0048193 Golgi vesicle transport IBA
 cellular_componentGO:0000139 Golgi membrane IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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