ENSDARG00000041098


Danio rerio

Features
Gene ID: ENSDARG00000041098
  
Biological name :barx2
  
Synonyms : barx2 / BARX homeobox 2
  
Possible biological names infered from orthology : Homeobox protein BarH-like 2 / O08686 / Q9UMQ3
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 47313715
Gene end: 47346327
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000153145
Ensembl peptide - ENSDARP00000120269
Ensembl peptide - ENSDARP00000150338
Ensembl peptide - ENSDARP00000156198
NCBI entrez gene - 100002200     See in Manteia.
swissprot - F6NKZ9
ZFIN ID - ZDB-GENE-081120-4
Ensembl - ENSDARG00000041098
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BARX2ENSGALG00000029382Gallus gallus
 BARX2ENSG00000043039Homo sapiens
 Barx2ENSMUSG00000032033Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
barx1 / BARX homeobox 1 / Q9ER42* / Q9HBU1* / Homeobox protein BarH-like 1 *ENSDARG0000000740738
barhl1b / BarH-like homeobox 1b / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000001901326
barhl2 / BarH-like homeobox 2 / Q8VIB5* / Q9NY43* / BarH-like 2 homeobox protein *ENSDARG0000010436126
barhl1a / BarH-like homeobox 1a / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000003550824
bsx / Q6R3Q6 / brain-specific homeobox / Q3C1V8* / Q810B3* / Brain-specific homeobox protein homolog *ENSDARG0000006897624
hlx1 / H2.0-like homeo box 1 (Drosophila) / HLX* / Q14774* / Q61670* / H2.0 like homeobox* / H2.0-like homeobox protein *ENSDARG0000000913422
lbx2 / ladybird homeobox 2ENSDARG0000002513122
dbx1b / developing brain homeobox 1b / DBX1* / P52950* / A6NMT0* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000000185920
lbx1a / ladybird homeobox 1a / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001832120
tlx1 / T cell leukemia homeobox 1 / P31314*ENSDARG0000000396519
nkx6.1 / NK6 homeobox 1 / P78426* / Q99MA9* / Homeobox protein Nkx-6.1 *ENSDARG0000002256919
dbx1a / Q9PTU1 / developing brain homeobox 1a / DBX1* / A6NMT0* / P52950* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000008639319
tlx2 / T cell leukemia homeobox 2 / TLX1* / P31314* / T cell leukemia homeobox 1*ENSDARG0000001127318
tlx3b / T cell leukemia homeobox 3bENSDARG0000001761518
lbx1b / ladybird homeobox 1b / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001861118
nkx6.2 / NK6 homeobox 2 / Q9C056*ENSDARG0000010473518
nkx6.3 / NK6 homeobox 3 / A6NJ46* / Q3UHX8* / Homeobox protein Nkx-6.3 *ENSDARG0000006052916
HHEX / hematopoietically expressed homeobox / Q03014*ENSDARG0000009823115


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001502 cartilage condensation IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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