ENSDARG00000060529


Danio rerio

Features
Gene ID: ENSDARG00000060529
  
Biological name :nkx6.3
  
Synonyms : NK6 homeobox 3 / nkx6.3
  
Possible biological names infered from orthology : A6NJ46 / Homeobox protein Nkx-6.3 / Q3UHX8
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 38415374
Gene end: 38419647
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000079830
Ensembl peptide - ENSDARP00000119879
NCBI entrez gene - 558978     See in Manteia.
swissprot - F1R9B0
swissprot - F1RAI4
ZFIN ID - ZDB-GENE-070810-7
Ensembl - ENSDARG00000060529
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NKX6-3ENSGALG00000018503Gallus gallus
 A6NJ46ENSG00000165066Homo sapiens
 Nkx6-3ENSMUSG00000063672Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nkx6.2 / NK6 homeobox 2 / Q9C056*ENSDARG0000010473548
nkx6.1 / NK6 homeobox 1 / P78426* / Q99MA9* / Homeobox protein Nkx-6.1 *ENSDARG0000002256945
hlx1 / H2.0-like homeo box 1 (Drosophila) / HLX* / Q14774* / Q61670* / H2.0 like homeobox* / H2.0-like homeobox protein *ENSDARG0000000913419
barhl1b / BarH-like homeobox 1b / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000001901319
dbx1a / Q9PTU1 / developing brain homeobox 1a / DBX1* / A6NMT0* / P52950* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000008639319
barhl2 / BarH-like homeobox 2 / Q8VIB5* / Q9NY43* / BarH-like 2 homeobox protein *ENSDARG0000010436119
tlx2 / T cell leukemia homeobox 2 / TLX1* / P31314* / T cell leukemia homeobox 1*ENSDARG0000001127318
tlx3b / T cell leukemia homeobox 3bENSDARG0000001761518
barhl1a / BarH-like homeobox 1a / Q9BZE3* / P63157* / BARHL1* / BarH like homeobox 1* / BarH-like 1 homeobox protein *ENSDARG0000003550818
dbx1b / developing brain homeobox 1b / DBX1* / P52950* / A6NMT0* / Homeobox protein DBX1 * / developing brain homeobox 1*ENSDARG0000000185917
bsx / Q6R3Q6 / brain-specific homeobox / Q3C1V8* / Q810B3* / Brain-specific homeobox protein homolog *ENSDARG0000006897617
tlx1 / T cell leukemia homeobox 1 / P31314*ENSDARG0000000396515
barx1 / BARX homeobox 1 / Q9ER42* / Q9HBU1* / Homeobox protein BarH-like 1 *ENSDARG0000000740715
lbx1a / ladybird homeobox 1a / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001832115
lbx2 / ladybird homeobox 2ENSDARG0000002513115
barx2 / BARX homeobox 2 / O08686* / Q9UMQ3* / Homeobox protein BarH-like 2 *ENSDARG0000004109815
lbx1b / ladybird homeobox 1b / LBX1* / P52954* / P52955* / ladybird homeobox 1* / Transcription factor LBX1 *ENSDARG0000001861113
HHEX / hematopoietically expressed homeobox / Q03014*ENSDARG0000009823113


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR033630  Homeobox protein NKX-6.1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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