ENSDARG00000062661


Danio rerio

Features
Gene ID: ENSDARG00000062661
  
Biological name :abca4b
  
Synonyms : abca4b / ATP-binding cassette, sub-family A (ABC1), member 4b
  
Possible biological names infered from orthology : ABCA4 / ATP-binding cassette, sub-family A (ABC1), member 4 / ATP binding cassette subfamily A member 4 / O35600 / P78363
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 15203322
Gene end: 15294707
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000085193
Ensembl peptide - ENSDARP00000113256
NCBI entrez gene - 555506     See in Manteia.
RefSeq - XM_021467019
swissprot - F1QVE1
swissprot - F1R045
ZFIN ID - ZDB-GENE-050517-4
Ensembl - ENSDARG00000062661
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCA4ENSGALG00000005752Gallus gallus
 ABCA4ENSG00000198691Homo sapiens
 Abca4ENSMUSG00000028125Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
abca4a / ATP-binding cassette, sub-family A (ABC1), member 4a / ABCA4* / P78363* / O35600* / ATP binding cassette subfamily A member 4* / ATP-binding cassette, sub-family A (ABC1), member 4*ENSDARG0000005716972
abca1a / ATP-binding cassette, sub-family A (ABC1), member 1A / ABCA1* / P41233* / O95477* / ATP binding cassette subfamily A member 1* / ATP-binding cassette, sub-family A (ABC1), member 1*ENSDARG0000007463549
abca2 / ATP-binding cassette, sub-family A (ABC1), member 2 / Q9BZC7* / ATP binding cassette subfamily A member 2*ENSDARG0000001350038
abca12 / ATP-binding cassette, sub-family A (ABC1), member 12 / Q86UK0* / ATP binding cassette subfamily A member 12*ENSDARG0000007474927
abca3b / ATP-binding cassette, sub-family A (ABC1), member 3b / ABCA3* / Abca14* / Abca15* / Abca16* / Abca17* / E9PX95* / Q8R420* / Q99758* / ATP binding cassette subfamily A member 3* / A...ENSDARG0000010052426
zgc:172302 / ABCA7* / Q8IZY2* / ATP binding cassette subfamily A member 7*ENSDARG0000007422123
abca5 / ATP-binding cassette, sub-family A (ABC1), member 5 / Q8K448* / Q8WWZ7* / ATP binding cassette subfamily A member 5*ENSDARG0000007404118


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR017871  ABC transporter, conserved site
 IPR026082  ABC transporter A
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IBA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IBA


Pathways (from Reactome)
Pathway description
The canonical retinoid cycle in rods (twilight vision)
ABC-family proteins mediated transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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