ENSDARG00000078865


Danio rerio

Features
Gene ID: ENSDARG00000078865
  
Biological name :cxxc5a
  
Synonyms : cxxc5a / CXXC finger protein 5a
  
Possible biological names infered from orthology : CXXC5 / CXXC finger protein 5 / Mus musculus CXXC finger 5 (Cxxc5), transcript variant 2, mRNA. / Q7LFL8 / Q91WA4
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 28863121
Gene end: 28920245
  
Corresponding Affymetrix probe sets: Dr.18724.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000112750
Ensembl peptide - ENSDARP00000147051
NCBI entrez gene - 557911     See in Manteia.
swissprot - E7FC24
ZFIN ID - ZDB-GENE-030131-3178
Ensembl - ENSDARG00000078865
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CXXC5ENSGALG00000000884Gallus gallus
 CXXC5ENSG00000171604Homo sapiens
 Cxxc5ENSMUSG00000046668Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cxxc5b / CXXC finger protein 5b / CXXC5* / Q7LFL8* / Q91WA4* / CXXC finger protein 5* / Mus musculus CXXC finger 5 (Cxxc5), transcript variant 2, mRNA.*ENSDARG0000007573556
cxxc4 / CXXC finger 4 / Q6NXI8* / CXXC finger protein 4* / CXXC-type zinc finger protein 4 *ENSDARG0000007781722
tet1 / tet methylcytosine dioxygenase 1 / Q3URK3* / Q8NFU7*ENSDARG0000007523018
tet3 / tet methylcytosine dioxygenase 3 / O43151* / Q8BG87* / Mus musculus tet methylcytosine dioxygenase 3 (Tet3), transcript variant 1, mRNA.*ENSDARG0000006264614
tet2 / tet methylcytosine dioxygenase 2 / Q4JK59* / Q6N021* / Mus musculus tet methylcytosine dioxygenase 2 (Tet2), transcript variant 2, mRNA.*ENSDARG0000007692814


Protein motifs (from Interpro)
Interpro ID Name
 IPR002857  Zinc finger, CXXC-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0002040 sprouting angiogenesis IMP
 biological_processGO:0048793 pronephros development IMP
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle decreased angle to atrium , abnormal
Show

 ZFA:0000014 dorsal aorta dorsal aorta decreased distance caudal vein , abnormal
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 ZFA:0000114 heart heart dysplastic , abnormal
heart edematous , abnormal
heart straight , abnormal
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 ZFA:0000151 pronephros pronephros malformed , abnormal
pronephros cystic , abnormal
Show

 ZFA:0000477 posterior cardinal vein posterior cardinal vein endothelial cell apoptotic process increased occurrence , abnormal
posterior cardinal vein decreased thickness , abnormal
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 ZFA:0001094 whole organism whole organism curved ventral , abnormal
whole organism dead , abnormal
whole organism decreased amount , abnormal
Show

 ZFA:0001286 caudal vein plexus caudal vein plexus morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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