ENSDARG00000099783


Danio rerio

Features
Gene ID: ENSDARG00000099783
  
Biological name :pcdh2ac
  
Synonyms : pcdh2ac / protocadherin 2 alpha c
  
Possible biological names infered from orthology : Pcdhac1 / PCDHAC2 / protocadherin alpha subfamily C, 1 / protocadherin alpha subfamily C, 2 / Q9Y5I4
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 2123123
Gene end: 2163454
  
Corresponding Affymetrix probe sets: Dr.19866.1.S1_at (Zebrafish Array)   NM_001007762_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000136655
NCBI entrez gene - 493587     See in Manteia.
RefSeq - NM_001007762
RefSeq Peptide - NP_001007763
swissprot - A0A0R4IMS0
ZFIN ID - ZDB-GENE-041118-12
Ensembl - ENSDARG00000099783
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9Y5I4ENSG00000243232Homo sapiens
 Pcdhac1ENSMUSG00000103255Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh2ac / pcdh2ab9 / protocadherin 2 alpha b 9 / Q9Y5I4* / PCDHAC2* / Pcdhac1* / protocadherin alpha subfamily C, 1* / protocadherin alpha subfamily C, 2*ENSDARG0000010131898
pcdh2ab10 / protocadherin 2 alpha b 10 / Pcdhac1* / protocadherin alpha subfamily C, 1*ENSDARG0000010390644
pcdh1g3 / protocadherin 1 gamma 3 / Pcdhac1* / protocadherin alpha subfamily C, 1*ENSDARG0000009964632
pcdh1g32 / protocadherin 1 gamma 32 / Pcdhac1* / protocadherin alpha subfamily C, 1*ENSDARG0000010082932
BX005294.2ENSDARG0000010936110


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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