ENSDARG00000099646


Danio rerio

Features
Gene ID: ENSDARG00000099646
  
Biological name :pcdh1g3
  
Synonyms : pcdh1g3 / protocadherin 1 gamma 3
  
Possible biological names infered from orthology : Pcdhac1 / protocadherin alpha subfamily C, 1
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 21660447
Gene end: 21820057
  
Corresponding Affymetrix probe sets: Dr.8598.1.A1_at (Zebrafish Array)   NM_001023577_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000132497
NCBI entrez gene - 553987     See in Manteia.
RefSeq - NM_001023577
RefSeq Peptide - NP_001018871
swissprot - A0A0R4IFD4
ZFIN ID - ZDB-GENE-050608-3
Ensembl - ENSDARG00000099646
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000040751Gallus gallus
 Pcdhac1ENSMUSG00000103255Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh1g32 / protocadherin 1 gamma 32 / Pcdhac1* / protocadherin alpha subfamily C, 1*ENSDARG0000010082946
pcdh2ac / protocadherin 2 alpha c / Q9Y5I4* / PCDHAC2* / Pcdhac1* / protocadherin alpha subfamily C, 1* / protocadherin alpha subfamily C, 2*ENSDARG0000009978335
pcdh2ac / pcdh2ab9 / protocadherin 2 alpha b 9 / Q9Y5I4* / PCDHAC2* / Pcdhac1* / protocadherin alpha subfamily C, 1* / protocadherin alpha subfamily C, 2*ENSDARG0000010131835
pcdh2ab10 / protocadherin 2 alpha b 10 / Pcdhac1* / protocadherin alpha subfamily C, 1*ENSDARG0000010390635
BX005294.2ENSDARG0000010936113


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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