ENSDARG00000103906


Danio rerio

Features
Gene ID: ENSDARG00000103906
  
Biological name :pcdh2ab10
  
Synonyms : pcdh2ab10 / protocadherin 2 alpha b 10
  
Possible biological names infered from orthology : Pcdhac1 / protocadherin alpha subfamily C, 1
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 2123123
Gene end: 2193248
  
Corresponding Affymetrix probe sets: Dr.19866.1.S1_at (Zebrafish Array)   NM_001009589_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000110062
NCBI entrez gene - 493598     See in Manteia.
RefSeq - NM_001009589
RefSeq Peptide - NP_001009589
swissprot - F1QUV5
ZFIN ID - ZDB-GENE-041118-9
Ensembl - ENSDARG00000103906
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Pcdhac1ENSMUSG00000103255Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh2ac / protocadherin 2 alpha c / Q9Y5I4* / PCDHAC2* / Pcdhac1* / protocadherin alpha subfamily C, 1* / protocadherin alpha subfamily C, 2*ENSDARG0000009978348
pcdh2ac / pcdh2ab9 / protocadherin 2 alpha b 9 / Q9Y5I4* / PCDHAC2* / Pcdhac1* / protocadherin alpha subfamily C, 1* / protocadherin alpha subfamily C, 2*ENSDARG0000010131848
pcdh1g3 / protocadherin 1 gamma 3 / Pcdhac1* / protocadherin alpha subfamily C, 1*ENSDARG0000009964635
pcdh1g32 / protocadherin 1 gamma 32 / Pcdhac1* / protocadherin alpha subfamily C, 1*ENSDARG0000010082931
BX005294.2ENSDARG0000010936110


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr