ENSDARG00000103647


Danio rerio

Features
Gene ID: ENSDARG00000103647
  
Biological name :gpc5a
  
Synonyms : glypican 5a / gpc5a
  
Possible biological names infered from orthology : glypican 5 / GPC5 / P78333 / Q8CAL5
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 3100244
Gene end: 3295045
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000136633
NCBI entrez gene - 559454     See in Manteia.
RefSeq - NM_001302236
RefSeq Peptide - NP_001289165
swissprot - A0A0H2UKP8
ZFIN ID - ZDB-GENE-140106-260
Ensembl - ENSDARG00000103647
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GPC5ENSGALG00000016902Gallus gallus
 GPC5ENSG00000179399Homo sapiens
 Gpc5ENSMUSG00000022112Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gpc5b / glypican 5bENSDARG0000002458834
gpc3 / glypican 3 / P51654* / Q8CFZ4*ENSDARG0000003219934
CU467828.1ENSDARG0000007408227
gpc6b / glypican 6b / GPC6* / Q9Y625* / glypican 6*ENSDARG0000010421925
gpc1a / glypican 1a / GPC1* / P35052* / Q9QZF2* / glypican 1*ENSDARG0000001934124
gpc6a / glypican 6a / GPC6* / Q9Y625* / glypican 6*ENSDARG0000010315624
gpc4 / glypican 4 / O75487* / P51655*ENSDARG0000001547223
gpc1b / glypican 1b / GPC1* / P35052* / glypican 1*ENSDARG0000009058523
gpc2 / glypican 2 / Q8N158*ENSDARG0000010421716


Protein motifs (from Interpro)
Interpro ID Name
 IPR001863  Glypican
 IPR031188  Glypican-5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009966 regulation of signal transduction IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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