ENSDARG00000104219


Danio rerio

Features
Gene ID: ENSDARG00000104219
  
Biological name :gpc6b
  
Synonyms : glypican 6b / gpc6b
  
Possible biological names infered from orthology : glypican 6 / GPC6 / Q9R087 / Q9Y625
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 53364472
Gene end: 53422084
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000137536
NCBI entrez gene - 100331176     See in Manteia.
RefSeq - NM_001287541
RefSeq Peptide - NP_001274470
swissprot - V5NF92
ZFIN ID - ZDB-GENE-130515-2
Ensembl - ENSDARG00000104219
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GPC6ENSGALG00000016900Gallus gallus
 GPC6ENSG00000183098Homo sapiens
 Gpc6ENSMUSG00000058571Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
gpc6a / glypican 6a / GPC6* / Q9Y625* / glypican 6*ENSDARG0000010315657
gpc4 / glypican 4 / O75487* / P51655*ENSDARG0000001547249
gpc1b / glypican 1b / GPC1* / P35052* / glypican 1*ENSDARG0000009058539
gpc1a / glypican 1a / GPC1* / P35052* / Q9QZF2* / glypican 1*ENSDARG0000001934138
gpc2 / glypican 2 / Q8N158*ENSDARG0000010421726
gpc5a / glypican 5a / GPC5* / P78333* / glypican 5*ENSDARG0000010364725
gpc5b / glypican 5bENSDARG0000002458824
gpc3 / glypican 3 / P51654* / Q8CFZ4*ENSDARG0000003219921
CU467828.1ENSDARG0000007408220


Protein motifs (from Interpro)
Interpro ID Name
 IPR001863  Glypican
 IPR019803  Glypican, conserved site
 IPR031183  Glypican-6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009966 regulation of signal transduction IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IEA
 molecular_functionGO:0043395 heparan sulfate proteoglycan binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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