ENSGALG00000016900


Gallus gallus

Features
Gene ID: ENSGALG00000016900
  
Biological name :GPC6
  
Synonyms : glypican 6 / GPC6
  
Possible biological names infered from orthology : Q9R087 / Q9Y625
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 146527090
Gene end: 147094328
  
Corresponding Affymetrix probe sets: GgaAffx.10833.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027267
Ensembl peptide - ENSGALP00000043926
NCBI entrez gene - 418794     See in Manteia.
RefSeq - XM_015274672
swissprot - A0A1D5NUB2
swissprot - F1P027
Ensembl - ENSGALG00000016900
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gpc6aENSDARG00000103156Danio rerio
 gpc6bENSDARG00000104219Danio rerio
 GPC6ENSG00000183098Homo sapiens
 Gpc6ENSMUSG00000058571Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GPC4 / glypican 4 / O75487* / P51655*ENSGALG0000000608066
GPC1 / glypican 1 / P35052* / Q9QZF2*ENSGALG0000004031647
GPC3 / glypican 3 / P51654* / Q8CFZ4*ENSGALG0000000608724
GPC5 / glypican 5 / P78333* / Q8CAL5*ENSGALG0000001690223
ENSGALG0000000672422


Protein motifs (from Interpro)
Interpro ID Name
 IPR001863  Glypican
 IPR019803  Glypican, conserved site
 IPR031183  Glypican-6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009966 regulation of signal transduction IEA
 biological_processGO:0016477 cell migration IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031225 anchored component of membrane IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IEA
 molecular_functionGO:0043395 heparan sulfate proteoglycan binding IEA


Pathways (from Reactome)
Pathway description
A tetrasaccharide linker sequence is required for GAG synthesis
HS-GAG biosynthesis
HS-GAG degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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