ENSDARG00000104493


Danio rerio

Features
Gene ID: ENSDARG00000104493
  
Biological name :LO018176.1
  
Synonyms : LO018176.1
  
Possible biological names infered from orthology : Mus musculus TBC1 domain family, member 8 (Tbc1d8), transcript variant 3, mRNA. / O95759 / Q9Z1A9 / TBC1D8 / TBC1 domain family member 8
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 56194410
Gene end: 56222014
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000134284
swissprot - A0A0G2KPH4
Ensembl - ENSDARG00000104493
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TBC1D8ENSGALG00000016776Gallus gallus
 O95759ENSG00000204634Homo sapiens
 Q9Z1A9ENSMUSG00000003134Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbc1d9 / TBC1 domain family, member 9 (with GRAM domain) / Q66K14* / TBC1D9B* / TBC1 domain family member 9B*ENSDARG0000004362743
tbc1d9 / TBC1 domain family, member 9 (with GRAM domain) / Q3UYK3* / Q6ZT07* / TBC1 domain family member 9*ENSDARG0000005990043
B0R0W9 / TBC1D8B / si:dkey-110k5.6 / Q0IIM8* / A3KGB4* / TBC1 domain family member 8B*ENSDARG0000006219243
sgsm3 / Q7T2D0 / small G protein signaling modulator 3 / Q8VCZ6* / Q96HU1*ENSDARG0000001903813
tbc1d2b / TBC1 domain family, member 2B / Q3U0J8* / Q9UPU7*ENSDARG0000006198613
tbc1d2 / TBC1 domain family, member 2 / B1AVH7* / Q9BYX2* / TBC1 domain family member 2A *ENSDARG0000007130412
tbc1d30 / TBC1 domain family, member 30 / Q69ZT9* / Q9Y2I9*ENSDARG0000007528111


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR002048  EF-hand domain
 IPR004182  GRAM domain
 IPR011992  EF-hand domain pair
 IPR011993  PH-like domain superfamily
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr