ENSDARG00000116608


Danio rerio

Features
Gene ID: ENSDARG00000116608
  
Biological name :pitx1
  
Synonyms : paired-like homeodomain 1 / pitx1
  
Possible biological names infered from orthology : O35160 / O75364 / P70314 / P78337 / paired like homeodomain 3 / paired-like homeodomain transcription factor 1 / Pituitary homeobox 3 / PITX3
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 45816030
Gene end: 45824439
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000154079
Ensembl peptide - ENSDARP00000155804
Ensembl peptide - ENSDARP00000145427
NCBI entrez gene - 678598     See in Manteia.
RefSeq - XM_021468902
swissprot - B2LT56
swissprot - Q1RLP1
ZFIN ID - ZDB-GENE-060421-3623
Ensembl - ENSDARG00000116608
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PITX1ENSGALG00000030237Gallus gallus
 PITX1ENSG00000069011Homo sapiens
 PITX3ENSG00000107859Homo sapiens
 Pitx1ENSMUSG00000021506Mus musculus
 Pitx3ENSMUSG00000025229Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pitx2 / Q9W5Z2 / paired-like homeodomain 2 / P97474* / Q99697* / paired-like homeodomain transcription factor 2*ENSDARG0000003619466
pitx3 / Q6QU75 / paired-like homeodomain 3ENSDARG0000007006962
dmbx1b / Q566X8 / diencephalon/mesencephalon homeobox 1b / DMBX1* / Q8NFW5* / diencephalon/mesencephalon homeobox 1*ENSDARG0000000251027
Q8JI10 / dmbx1a / diencephalon/mesencephalon homeobox 1a / DMBX1* / Q91ZK4* / Q8NFW5* / diencephalon/mesencephalon homeobox 1* / Diencephalon/mesencephalon homeobox protein 1 *ENSDARG0000000992226
otx2b / Q91981 / orthodenticle homeobox 2b / OTX2* / P32243* / orthodenticle homeobox 2*ENSDARG0000001123524
otx5 / orthodenticle homolog 5ENSDARG0000004348324
prrx1b / paired related homeobox 1b / PRRX1* / P63013* / P54821* / paired related homeobox 1* / Paired mesoderm homeobox protein 1 *ENSDARG0000004202723
crx / cone-rod homeoboxENSDARG0000001198922
prrx1a / paired related homeobox 1a / PRRX1* / P63013* / P54821* / paired related homeobox 1* / Paired mesoderm homeobox protein 1 *ENSDARG0000003397122
otx2a / Q90267 / orthodenticle homeobox 2aENSDARG0000003070321
otx1 / Q91994 / orthodenticle homeobox 1 / P32242* / P80205* / Homeobox protein OTX1 *ENSDARG0000009499221
zgc:101100ENSDARG0000002195917
mixl1 / Mix paired-like homeobox / Q9H2W2* / Q9WUI0* / Homeobox protein MIXL1 *ENSDARG0000006925217
pax10 / paired box 10ENSDARG0000005336416
gsc / goosecoid / P56915* / Q02591* / goosecoid homeobox* / Homeobox protein goosecoid *ENSDARG0000005907315


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR016233  Homeobox protein Pitx/unc30
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr